RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ELF5Q9UKW6 265 aaPredicted RBP6.12□□□□□ -1.43
CD44-228ENST00000528455 RBMX2Q9Y388 322 aaKnown RBP6.12□□□□□ -1.43
CD44-228ENST00000528455 ZANQ9Y493 2812 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 hADV38S2A0JD32 116 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 TMEM235A6NFC5 223 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 CEACAM18A8MTB9 384 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 CTXN2P0C2S0 81 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 P2RX3P56373 397 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 ACTBP60709 375 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 ACTG1P63261 375 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 BAK1Q16611 211 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 KRTAP19-4Q3LI73 84 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 RSBN1Q5VWQ0 802 aaPredicted RBP6.11□□□□□ -1.43
CD44-228ENST00000528455 WDR25Q64LD2 544 aaPredicted RBP6.11□□□□□ -1.43
CD44-228ENST00000528455 TRAT1Q6PIZ9 186 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 CLEC9AQ6UXN8 241 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 FAM216BQ8N7L0 139 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 TMEM229BQ8NBD8 167 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 TMEM185AQ8NFB2 350 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 OR8B3Q8NGG8 313 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 C8orf46Q8TAG6 207 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 PLPPR1Q8TBJ4 325 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 BORCS5Q969J3 196 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 RAB39BQ96DA2 213 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 OR8B2Q96RD0 313 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 ST6GALNAC5Q9BVH7 336 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 BPESC1Q9GZL8 116 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 LINC00574Q9H8X3 128 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 Q9N2K0 584 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 RAB9BQ9NP90 201 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 C12orf4Q9NQ89 552 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 TAS2R3Q9NYW6 316 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 KCNIP1Q9NZI2 227 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 CLN8Q9UBY8 286 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 TRAPPC2LQ9UL33 140 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 ANAPC10Q9UM13 185 aa6.11□□□□□ -1.43
CD44-228ENST00000528455 UBE2J1Q9Y385 318 aaPredicted RBP6.11□□□□□ -1.43
CD44-228ENST00000528455 NAV3Q8IVL0 2385 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 IGHV4-30-2A0A087WSY4 118 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 MEIKINA0A087WXM9 373 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 KIR2DS1A0A191URI9 304 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 A0A1W2PPH5 198 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 ANKRD20A5PA0PJZ0 165 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 ODAMA1E959 279 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 TRDCB7Z8K6 153 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 HSPB6O14558 160 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 FOXH1O75593 365 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 UPK1BO75841 260 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 DIRAS3O95661 229 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 IGHV2-5P01817 119 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 TFF1P04155 84 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 FCGR3AP08637 254 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 CSF1P09603 554 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 PTHLHP12272 177 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 IL7P13232 177 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 RPS2P15880 293 aaKnown RBP6.1□□□□□ -1.43
CD44-228ENST00000528455 NDUFB7P17568 137 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 RCC1P18754 421 aaPredicted RBP6.1□□□□□ -1.43
CD44-228ENST00000528455 TBPP20226 339 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 USF1P22415 310 aaPredicted RBP6.1□□□□□ -1.43
CD44-228ENST00000528455 RCVRNP35243 200 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 KIR2DS4P43632 304 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 GLIPR1P48060 266 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 AP3S2P59780 193 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 GNB2P62879 340 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 RPL31P62899 125 aaKnown RBP6.1□□□□□ -1.43
CD44-228ENST00000528455 DGCR2P98153 550 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 CD83Q01151 205 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 LOXL1Q08397 574 aaPredicted RBP6.1□□□□□ -1.43
CD44-228ENST00000528455 DYRK1AQ13627 763 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 KIR2DS1Q14954 304 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 ESCO2Q56NI9 601 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 TMEM200BQ69YZ2 307 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 DHRS11Q6UWP2 260 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 C1orf122Q6ZSJ8 110 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 BTN2A1Q7KYR7 527 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 TRAPPC6BQ86SZ2 158 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 TOMM5Q8N4H5 51 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 LY6G5BQ8NDX9 201 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 BEST4Q8NFU0 473 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 OR10A7Q8NGE5 316 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 OR5AP2Q8NGF4 316 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 CLDND2Q8NHS1 167 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 MRPL30Q8TCC3 161 aaKnown RBP6.1□□□□□ -1.43
CD44-228ENST00000528455 DYRK2Q92630 601 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 COQ2Q96H96 371 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 SMR3AQ99954 134 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 DCTN5Q9BTE1 182 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 CHMP1AQ9HD42 196 aaPredicted RBP6.1□□□□□ -1.43
CD44-228ENST00000528455 PALMDQ9NP74 551 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 CTSZQ9UBR2 303 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 KIF25Q9UIL4 384 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 LINC00312Q9Y6C7 94 aa6.1□□□□□ -1.43
CD44-228ENST00000528455 NSD1Q96L73 2696 aaPredicted RBP6.09□□□□□ -1.43
CD44-228ENST00000528455 MALRD1Q5VYJ5 2156 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 LOC105371242A0A075B767 164 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 TRGV10A0A0A0MS01 117 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 PPIAL4CA0A0B4J2A2 164 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 KBTBD11-OT1A0A1B0GTJ5 212 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 hCG_1809904A0A1W2PP81 198 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms