RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 GSKIPQ9P0R6 139 aa17.34■□□□□ 0.37
VPS28-209ENST00000528142 DNAJB11Q9UBS4 358 aa17.34■□□□□ 0.37
VPS28-209ENST00000528142 IGSF10Q6WRI0 2623 aa17.34■□□□□ 0.37
VPS28-209ENST00000528142 POLEQ07864 2286 aa17.33■□□□□ 0.37
VPS28-209ENST00000528142 C12orf77C9JDV5 145 aa17.33■□□□□ 0.37
VPS28-209ENST00000528142 ADH4P08319 380 aa17.33■□□□□ 0.37
VPS28-209ENST00000528142 CHRNB4P30926 498 aa17.33■□□□□ 0.37
VPS28-209ENST00000528142 RAB32Q13637 225 aa17.33■□□□□ 0.37
VPS28-209ENST00000528142 PRSS54Q6PEW0 395 aa17.33■□□□□ 0.37
VPS28-209ENST00000528142 BVESQ8NE79 360 aa17.33■□□□□ 0.37
VPS28-209ENST00000528142 OR10V1Q8NGI7 309 aa17.33■□□□□ 0.37
VPS28-209ENST00000528142 OOEPA6NGQ2 149 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 PGLYRP1O75594 196 aaPredicted RBP17.33■□□□□ 0.36
VPS28-209ENST00000528142 GLIPR1P48060 266 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 KRBOX4Q5JUW0 171 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 NCMAPQ5T1S8 102 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 ADAM5Q6NVV9 412 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 CMTM1Q8IZ96 169 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 OR1L1Q8NH94 360 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 Q8TCH9 128 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 FAM222BQ8WU58 562 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 ERGIC1Q969X5 290 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 TMEM56Q96MV1 263 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 UBQLN2Q9UHD9 624 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 MAB21L2Q9Y586 359 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 TMEM56-RWDD3S4R434 201 aa17.33■□□□□ 0.36
VPS28-209ENST00000528142 COL6A6A6NMZ7 2263 aa17.32■□□□□ 0.36
VPS28-209ENST00000528142 IGHV3OR15-7A0A075B7D8 119 aa17.32■□□□□ 0.36
VPS28-209ENST00000528142 IGLV2-14P01704 120 aa17.32■□□□□ 0.36
VPS28-209ENST00000528142 TNFSF4P23510 183 aa17.32■□□□□ 0.36
VPS28-209ENST00000528142 GABRA2P47869 451 aa17.32■□□□□ 0.36
VPS28-209ENST00000528142 LUMP51884 338 aaPredicted RBP17.32■□□□□ 0.36
VPS28-209ENST00000528142 SRPXP78539 464 aa17.32■□□□□ 0.36
VPS28-209ENST00000528142 DMRTC2Q8IXT2 367 aaPredicted RBP17.32■□□□□ 0.36
VPS28-209ENST00000528142 GPHA2Q96T91 129 aa17.32■□□□□ 0.36
VPS28-209ENST00000528142 OR5AC2Q9NZP5 309 aa17.32■□□□□ 0.36
VPS28-209ENST00000528142 RNF7Q9UBF6 113 aa17.32■□□□□ 0.36
VPS28-209ENST00000528142 SHISA9B4DS77 424 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 CD55P08174 381 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 CEACAM6P40199 344 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 ADORA2A-AS1P86434 159 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 INO80EQ8NBZ0 244 aaPredicted RBP17.31■□□□□ 0.36
VPS28-209ENST00000528142 DCUN1D4Q92564 292 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 GALMQ96C23 342 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 SNX22Q96L94 193 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 TOLLIPQ9H0E2 274 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 PARP12Q9H0J9 701 aaKnown RBP17.31■□□□□ 0.36
VPS28-209ENST00000528142 FBXO9Q9UK97 447 aaPredicted RBP17.31■□□□□ 0.36
VPS28-209ENST00000528142 CHD3Q12873 2000 aaKnown RBP17.31■□□□□ 0.36
VPS28-209ENST00000528142 SMG1Q96Q15 3661 aaKnown RBP17.31■□□□□ 0.36
VPS28-209ENST00000528142 HSPA12AO43301 675 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 KCNAB3O43448 404 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 SLC51BQ86UW2 128 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 FAM219AQ8IW50 185 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 OR8H3Q8N146 312 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 TPRX1Q8N7U7 411 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 ANGPTL6Q8NI99 470 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 MRGPRDQ8TDS7 321 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 RNASE6Q93091 150 aaKnown RBP17.31■□□□□ 0.36
VPS28-209ENST00000528142 RRNAD1Q96FB5 475 aaKnown RBP17.31■□□□□ 0.36
VPS28-209ENST00000528142 LURAP1Q96LR2 239 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 DIRC2Q96SL1 478 aa17.31■□□□□ 0.36
VPS28-209ENST00000528142 ESRP2Q9H6T0 727 aaKnown RBP17.31■□□□□ 0.36
VPS28-209ENST00000528142 UBE2J1Q9Y385 318 aaPredicted RBP17.31■□□□□ 0.36
VPS28-209ENST00000528142 RELNP78509 3460 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 FAM90A27PA6NNH2 459 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 C17orf100A8MU93 164 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 CDS2O95674 445 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 HBZP02008 142 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 WNT2P09544 360 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 UCP1P25874 307 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 BEX5Q5H9J7 111 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 FAM201AQ5SY85 155 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 C6orf183Q5T699 404 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 TMEM268Q5VZI3 342 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 MEX3BQ6ZN04 569 aaKnown RBP17.3■□□□□ 0.36
VPS28-209ENST00000528142 SLC35G3Q8N808 338 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 OR13A1Q8NGR1 328 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 TMED3Q9Y3Q3 217 aa17.3■□□□□ 0.36
VPS28-209ENST00000528142 PCNX1Q96RV3 2341 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 NBASA2RRP1 2371 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 RPS10-NUDT3A0A1W2PQS6 291 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 H0Y980 276 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 TNFSF12O43508 249 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 BCL2L11O43521 198 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 B3GALNT1O75752 331 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 PET100P0DJ07 73 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 F2RP25116 425 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 CD80P33681 288 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 SNTB1Q13884 538 aaKnown RBP17.29■□□□□ 0.36
VPS28-209ENST00000528142 SELENOHQ8IZQ5 122 aaKnown RBP17.29■□□□□ 0.36
VPS28-209ENST00000528142 OR1S1Q8NH92 325 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 PLPPR2Q96GM1 343 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 AKR1E2Q96JD6 320 aa17.29■□□□□ 0.36
VPS28-209ENST00000528142 NKX2-6A6NCS4 301 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 K7N7A8 449 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 MGST3O14880 152 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 IL2RGP31785 369 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 PPP1R35Q8TAP8 253 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 DNTTIP1Q9H147 329 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms