RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 NPBQ8NG41 125 aa12.35□□□□□ -0.43
CHMP4A-203ENST00000527154 RITA1Q96K30 269 aa12.35□□□□□ -0.43
CHMP4A-203ENST00000527154 ANKRD60Q9BZ19 345 aa12.35□□□□□ -0.43
CHMP4A-203ENST00000527154 ZNF556Q9HAH1 456 aa12.35□□□□□ -0.43
CHMP4A-203ENST00000527154 PARP11Q9NR21 331 aa12.35□□□□□ -0.43
CHMP4A-203ENST00000527154 FAM53CQ9NYF3 392 aa12.35□□□□□ -0.43
CHMP4A-203ENST00000527154 FOXA2Q9Y261 457 aaPredicted RBP12.35□□□□□ -0.43
CHMP4A-203ENST00000527154 NUBP2Q9Y5Y2 271 aa12.35□□□□□ -0.43
CHMP4A-203ENST00000527154 TRAV39A0A0B4J263 110 aa12.34□□□□□ -0.43
CHMP4A-203ENST00000527154 GNGT2O14610 69 aa12.34□□□□□ -0.43
CHMP4A-203ENST00000527154 EGR2P11161 476 aaPredicted RBP12.34□□□□□ -0.43
CHMP4A-203ENST00000527154 MECP2P51608 486 aaKnown RBP12.34□□□□□ -0.43
CHMP4A-203ENST00000527154 ACTBP60709 375 aa12.34□□□□□ -0.43
CHMP4A-203ENST00000527154 STEAP3Q658P3 488 aa12.34□□□□□ -0.43
CHMP4A-203ENST00000527154 PYHIN1Q6K0P9 492 aa12.34□□□□□ -0.43
CHMP4A-203ENST00000527154 FDX2Q6P4F2 183 aa12.34□□□□□ -0.43
CHMP4A-203ENST00000527154 RPP25LQ8N5L8 163 aaKnown RBP12.34□□□□□ -0.43
CHMP4A-203ENST00000527154 TUBA4BQ9H853 241 aa12.34□□□□□ -0.43
CHMP4A-203ENST00000527154 FAM118AQ9NWS6 357 aa12.34□□□□□ -0.43
CHMP4A-203ENST00000527154 A0A1W2PN81 502 aa12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 SHISA3A0PJX4 238 aa12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 SDCBPO00560 298 aaPredicted RBP12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 PRKACGP22612 351 aa12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 CHRNA7P36544 502 aa12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 KLF5Q13887 457 aaPredicted RBP12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 PTGES3Q15185 160 aaKnown RBP12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 CT45A1Q5HYN5 189 aa12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 ZNF660Q6AZW8 331 aaPredicted RBP12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 FAHD1Q6P587 224 aa12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 ADGRG5Q8IZF4 528 aa12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 OR13C9Q8NGT0 318 aa12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 OR2G2Q8NGZ5 317 aa12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 CT45A3Q8NHU0 189 aa12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 DNAJC9Q8WXX5 260 aa12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 CCDC124Q96CT7 223 aaKnown RBP12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 ZNF581Q9P0T4 197 aa12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 DYNC1H1Q14204 4646 aaKnown RBP12.33□□□□□ -0.44
CHMP4A-203ENST00000527154 DNAH2Q9P225 4427 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 NBR2O15453 112 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 KISS1Q15726 138 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 NHLRC3Q5JS37 347 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 LIN54Q6MZP7 749 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 ASCL4Q6XD76 172 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 GTSCR1Q86UQ5 136 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 OR51A4Q8NGJ6 313 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 TMEM163Q8TC26 289 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 ARL11Q969Q4 196 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 UTP4Q969X6 686 aaKnown RBP12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 ASB9Q96DX5 294 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 ST6GALNAC5Q9BVH7 336 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 TMED9Q9BVK6 235 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 DPCDQ9BVM2 203 aaPredicted RBP12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 CST11Q9H112 138 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 FRRS1LQ9P0K9 344 aa12.32□□□□□ -0.44
CHMP4A-203ENST00000527154 BRI3O95415 125 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 TMEM225BP0DP42 221 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 ZNF20P17024 532 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 ZP3P21754 424 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 NANOS3P60323 173 aaKnown RBP12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 GNGT1P63211 74 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 TMEM30BQ3MIR4 351 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 GID4Q8IVV7 300 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 SUMF2Q8NBJ7 301 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 OR9G4Q8NGQ1 327 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 OR10AC1Q8NH08 325 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 CASTOR1Q8WTX7 329 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 NSL1Q96IY1 281 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 TBX5Q99593 518 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 RSRP1Q9BUV0 290 aa12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 WARS2Q9UGM6 360 aaKnown RBP12.31□□□□□ -0.44
CHMP4A-203ENST00000527154 TMEM30CPA0ZSE6 113 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 M0R129 80 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 IGHV3-11P01762 117 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 CCR9P51686 369 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 ZNF85Q03923 595 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 ECSCRQ19T08 205 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 PIGYQ3MUY2 71 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 AKIRIN2Q53H80 203 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 ZNF691Q5VV52 312 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 C12orf73Q69YU5 71 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 ODF3L1Q8IXM7 274 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 Q8N402 240 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 TCEANCQ8N8B7 351 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 CANT1Q8WVQ1 401 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 PRRG3Q9BZD7 231 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 SLA2Q9H6Q3 261 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 NEK6Q9HC98 313 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 H2AFY2Q9P0M6 372 aaPredicted RBP12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 ERGIC3Q9Y282 383 aa12.3□□□□□ -0.44
CHMP4A-203ENST00000527154 IGHV3-43A0A0B4J1X8 118 aa12.29□□□□□ -0.44
CHMP4A-203ENST00000527154 NUPR2A6NF83 97 aa12.29□□□□□ -0.44
CHMP4A-203ENST00000527154 IGHV3-43DP0DP04 118 aa12.29□□□□□ -0.44
CHMP4A-203ENST00000527154 CX3CL1P78423 397 aa12.29□□□□□ -0.44
CHMP4A-203ENST00000527154 LRRC36Q1X8D7 754 aa12.29□□□□□ -0.44
CHMP4A-203ENST00000527154 LCN12Q6JVE5 192 aa12.29□□□□□ -0.44
CHMP4A-203ENST00000527154 ZNF529Q6P280 563 aa12.29□□□□□ -0.44
CHMP4A-203ENST00000527154 GAPTQ8N292 157 aa12.29□□□□□ -0.44
CHMP4A-203ENST00000527154 PARP16Q8N5Y8 322 aa12.29□□□□□ -0.44
CHMP4A-203ENST00000527154 OR2K2Q8NGT1 345 aa12.29□□□□□ -0.44
CHMP4A-203ENST00000527154 NR1H4Q96RI1 486 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms