RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 GMPPAQ96IJ6 420 aaPredicted RBP18.03■□□□□ 0.48
VPS28-205ENST00000526204 UNKLQ9H9P5 680 aaKnown RBP18.03■□□□□ 0.48
VPS28-205ENST00000526204 SPRR3Q9UBC9 169 aa18.03■□□□□ 0.48
VPS28-205ENST00000526204 AKR1D1P51857 326 aa18.02■□□□□ 0.48
VPS28-205ENST00000526204 PAX9P55771 341 aa18.02■□□□□ 0.48
VPS28-205ENST00000526204 ERVK11-1P61568 191 aa18.02■□□□□ 0.48
VPS28-205ENST00000526204 ARG2P78540 354 aa18.02■□□□□ 0.48
VPS28-205ENST00000526204 DPPA3Q6W0C5 159 aa18.02■□□□□ 0.48
VPS28-205ENST00000526204 ZNF497Q6ZNH5 498 aa18.02■□□□□ 0.48
VPS28-205ENST00000526204 TMEM217Q8N7C4 229 aa18.02■□□□□ 0.48
VPS28-205ENST00000526204 HIST1H2BAQ96A08 127 aa18.02■□□□□ 0.48
VPS28-205ENST00000526204 HIPK2Q9H2X6 1198 aa18.02■□□□□ 0.48
VPS28-205ENST00000526204 ZDHHC11Q9H8X9 412 aa18.02■□□□□ 0.48
VPS28-205ENST00000526204 MED19A0JLT2 244 aaPredicted RBP18.02■□□□□ 0.47
VPS28-205ENST00000526204 RBFOX3A6NFN3 312 aa18.02■□□□□ 0.47
VPS28-205ENST00000526204 PSG2P11465 335 aa18.02■□□□□ 0.47
VPS28-205ENST00000526204 PTAFRP25105 342 aa18.02■□□□□ 0.47
VPS28-205ENST00000526204 AKR1C3P42330 323 aa18.02■□□□□ 0.47
VPS28-205ENST00000526204 SCCPDHQ8NBX0 429 aa18.02■□□□□ 0.47
VPS28-205ENST00000526204 CD300LFQ8TDQ1 290 aa18.02■□□□□ 0.47
VPS28-205ENST00000526204 KIAA1456Q9P272 454 aa18.02■□□□□ 0.47
VPS28-205ENST00000526204 C1orf196B1AJZ1 125 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 CNOT4O95628 575 aaKnown RBP18.01■□□□□ 0.47
VPS28-205ENST00000526204 IFNA4P05014 189 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 SPINK2P20155 84 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 PPP1CBP62140 327 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 TGIF1Q15583 401 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 SOHLH1Q5JUK2 328 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 AKR1C8PQ5T2L2 129 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 RNASE11Q8TAA1 199 aaKnown RBP18.01■□□□□ 0.47
VPS28-205ENST00000526204 CDH20Q9HBT6 801 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 OR1A1Q9P1Q5 309 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 TRAPPC2LQ9UL33 140 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 A0A1B0GV50 99 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 ARGFXA6NJG6 315 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 SLC33A1O00400 549 aaPredicted RBP18.01■□□□□ 0.47
VPS28-205ENST00000526204 GPR37O15354 613 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 SMPD2O60906 423 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 OR2H2O95918 312 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 EPHA1P21709 976 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 RPL35P42766 123 aaKnown RBP18.01■□□□□ 0.47
VPS28-205ENST00000526204 SULT1A1P50225 295 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 UBE2NP61088 152 aaKnown RBP18.01■□□□□ 0.47
VPS28-205ENST00000526204 ZNF154Q13106 437 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 RNFT1Q5M7Z0 435 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 SPSB3Q6PJ21 355 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 IQCF2Q8IXL9 164 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 WSB1Q9Y6I7 421 aa18.01■□□□□ 0.47
VPS28-205ENST00000526204 A0A0G2JRQ6 117 aa18■□□□□ 0.47
VPS28-205ENST00000526204 CDRT15L2A8MXV6 281 aa18■□□□□ 0.47
VPS28-205ENST00000526204 SH2D1BO14796 132 aa18■□□□□ 0.47
VPS28-205ENST00000526204 NXPH3O95157 252 aa18■□□□□ 0.47
VPS28-205ENST00000526204 OR13C7P0DN81 318 aa18■□□□□ 0.47
VPS28-205ENST00000526204 RAC2P15153 192 aa18■□□□□ 0.47
VPS28-205ENST00000526204 CD200P41217 278 aa18■□□□□ 0.47
VPS28-205ENST00000526204 RAB2AP61019 212 aa18■□□□□ 0.47
VPS28-205ENST00000526204 TLE4Q04727 773 aa18■□□□□ 0.47
VPS28-205ENST00000526204 ZNF146Q15072 292 aa18■□□□□ 0.47
VPS28-205ENST00000526204 TESK1Q15569 626 aa18■□□□□ 0.47
VPS28-205ENST00000526204 P4HA3Q7Z4N8 544 aa18■□□□□ 0.47
VPS28-205ENST00000526204 C2CD4CQ8TF44 421 aa18■□□□□ 0.47
VPS28-205ENST00000526204 KIAA1324LA8MWY0 1029 aaPredicted RBP17.99■□□□□ 0.47
VPS28-205ENST00000526204 TXNL1O43396 289 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 IFNA5P01569 189 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 TAS2R30P59541 319 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 WDR86Q86TI4 376 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 ZFP82Q8N141 532 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 ABHD14AQ9BUJ0 271 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 OR2J1Q9GZK6 312 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 LIN7CQ9NUP9 197 aaKnown RBP17.99■□□□□ 0.47
VPS28-205ENST00000526204 RFNGQ9Y644 331 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 ZNF407Q9C0G0 2248 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 SIRPB1O00241 398 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 IGLV2-14P01704 120 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 HBE1P02100 147 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 PGA5P0DJD9 388 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 SELEP16581 610 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 SOX8P57073 446 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 CCL20P78556 96 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 HABP2Q14520 560 aaPredicted RBP17.99■□□□□ 0.47
VPS28-205ENST00000526204 GABRA6Q16445 453 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 ZNF561Q8N587 486 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 RARRES2Q99969 163 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 ESRP2Q9H6T0 727 aaKnown RBP17.99■□□□□ 0.47
VPS28-205ENST00000526204 MBNL3Q9NUK0 354 aaKnown RBP17.99■□□□□ 0.47
VPS28-205ENST00000526204 WIPI2Q9Y4P8 454 aa17.99■□□□□ 0.47
VPS28-205ENST00000526204 RBM7Q9Y580 266 aaKnown RBP17.99■□□□□ 0.47
VPS28-205ENST00000526204 A0A1W2PR80 420 aa17.98■□□□□ 0.47
VPS28-205ENST00000526204 NXPH2O95156 264 aa17.98■□□□□ 0.47
VPS28-205ENST00000526204 SP5Q6BEB4 398 aaPredicted RBP17.98■□□□□ 0.47
VPS28-205ENST00000526204 RBMXL1Q96E39 390 aaKnown RBP17.98■□□□□ 0.47
VPS28-205ENST00000526204 C20orf24Q9BUV8 137 aa17.98■□□□□ 0.47
VPS28-205ENST00000526204 ZNF98A6NK75 572 aa17.98■□□□□ 0.47
VPS28-205ENST00000526204 C3orf80F5H4A9 247 aa17.98■□□□□ 0.47
VPS28-205ENST00000526204 SFT2D1Q8WV19 159 aa17.98■□□□□ 0.47
VPS28-205ENST00000526204 DNAJC13O75165 2243 aa17.97■□□□□ 0.47
VPS28-205ENST00000526204 TMEM210A6NLX4 147 aa17.97■□□□□ 0.47
VPS28-205ENST00000526204 IQCF6A8MYZ5 107 aa17.97■□□□□ 0.47
VPS28-205ENST00000526204 CELA3BP08861 270 aa17.97■□□□□ 0.47
VPS28-205ENST00000526204 ACAA1P09110 424 aaPredicted RBP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms