RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 KLK11Q9UBX7 282 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 LPAR3Q9UBY5 353 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 MTFP1Q9UDX5 166 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 TRAPPC2LQ9UL33 140 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 UBE2J1Q9Y385 318 aaPredicted RBP12.56□□□□□ -0.4
LSM1-203ENST00000520755 KPTNQ9Y664 436 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 TRGV10A0A0A0MS01 117 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 IGKV1-6A0A0C4DH72 117 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 J3QRK9 145 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 MMP23AO75900 390 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 MMP9P14780 707 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 NAT1P18440 290 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 ERVFRD-1P60508 538 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 MRPS15P82914 257 aaKnown RBP12.55□□□□□ -0.4
LSM1-203ENST00000520755 BAK1Q16611 211 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 SRSF7Q16629 238 aaKnown RBP eCLIP12.55□□□□□ -0.4
LSM1-203ENST00000520755 UTF1Q5T230 341 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 FAM53AQ6NSI3 398 aaPredicted RBP12.55□□□□□ -0.4
LSM1-203ENST00000520755 VMO1Q7Z5L0 202 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 Q8N402 240 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 OR1L1Q8NH94 360 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 DMRTB1Q96MA1 342 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 ZNF714Q96N38 554 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 TBX15Q96SF7 602 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 WDR12Q9GZL7 423 aaKnown RBP12.55□□□□□ -0.4
LSM1-203ENST00000520755 LINC00574Q9H8X3 128 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 TAF9BQ9HBM6 251 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 SIRT7Q9NRC8 400 aa12.55□□□□□ -0.4
LSM1-203ENST00000520755 IGHV3OR16-10A0A075B7F0 116 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 TRAV40A0A0B4J280 105 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 ZNF729A6NN14 1252 aaPredicted RBP12.54□□□□□ -0.4
LSM1-203ENST00000520755 POM121CA8CG34 1229 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 C17orf98A8MV24 154 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 NPIPB11E5RHQ5 1161 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 ORC5O43913 435 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 CRLF1O75462 422 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 SCTP09683 121 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 ZNF728P0DKX0 622 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 OMGP23515 440 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 RCVRNP35243 200 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 CBX5P45973 191 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 DLX1P56177 255 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 PRB3Q04118 309 aaPredicted RBP12.54□□□□□ -0.4
LSM1-203ENST00000520755 ZNF846Q147U1 533 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 C6orf183Q5T699 404 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 PRAMEF5Q5TYX0 476 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 TEX29Q8N6K0 151 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 Q8N7P7 452 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 GDPD1Q8N9F7 314 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 BEST4Q8NFU0 473 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 NANPQ8TBE9 248 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 FCAMRQ8WWV6 532 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 UPRTQ96BW1 309 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 TSC22D3Q99576 134 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 ST6GALNAC5Q9BVH7 336 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 ZNF286AQ9HBT8 521 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 IFT46Q9NQC8 304 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 TAS2R3Q9NYW6 316 aa12.54□□□□□ -0.4
LSM1-203ENST00000520755 NSD1Q96L73 2696 aaPredicted RBP12.54□□□□□ -0.4
LSM1-203ENST00000520755 KBTBD11-OT1A0A1B0GTJ5 212 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 TRDCB7Z8K6 153 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 M0R1W7 72 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 FABP7O15540 132 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 HBZP02008 142 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 GSTT2P0CG29 244 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 GSTT2BP0CG30 244 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 SRD5A1P18405 259 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 CD40LGP29965 261 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 TRAT1Q6PIZ9 186 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 ZNF554Q86TJ5 538 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 LYSMD2Q8IV50 215 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 PDZD9Q8IXQ8 264 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 RFESDQ8TAC1 157 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 LHX4Q969G2 390 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 KIRREL1Q96J84 757 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 THAP7Q9BT49 309 aaPredicted RBP12.53□□□□□ -0.4
LSM1-203ENST00000520755 CABLES2Q9BTV7 478 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 ANXA10Q9UJ72 324 aa12.53□□□□□ -0.4
LSM1-203ENST00000520755 FN1P02751 2386 aaKnown RBP12.53□□□□□ -0.4
LSM1-203ENST00000520755 hCG_1809904A0A1W2PP81 198 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 A0A1W2PPE2 198 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 A0A1W2PR64 198 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 A0A1W2PRV1 198 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 F2RL2O00254 374 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 IGHV4-38-2P0DP08 117 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 IL7P13232 177 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 PPP5CP53041 499 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 LOXL3P58215 753 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 ACTBP60709 375 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 ACTG1P63261 375 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 SSBP1Q04837 148 aaKnown RBP12.52□□□□□ -0.41
LSM1-203ENST00000520755 GNMTQ14749 295 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 IGSF11Q5DX21 431 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 KLF17Q5JT82 389 aaPredicted RBP12.52□□□□□ -0.41
LSM1-203ENST00000520755 HEPN1Q6WQI6 88 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 ZNF782Q6ZMW2 699 aaPredicted RBP12.52□□□□□ -0.41
LSM1-203ENST00000520755 PRR18Q8N4B5 295 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 ZNF565Q8N9K5 539 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 ARL11Q969Q4 196 aa12.52□□□□□ -0.41
LSM1-203ENST00000520755 GAL3ST2Q9H3Q3 398 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms