RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 MST1P26927 711 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 EWSR1Q01844 656 aaKnown RBP eCLIP10.16□□□□□ -0.78
SYNPO-204ENST00000519664 ENDOGQ14249 297 aaKnown RBP10.16□□□□□ -0.78
SYNPO-204ENST00000519664 ACOT6Q3I5F7 207 aaPredicted RBP10.16□□□□□ -0.78
SYNPO-204ENST00000519664 REC114Q7Z4M0 266 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 MDP1Q86V88 176 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 TMEM251Q8N6I4 163 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 SLC25A40Q8TBP6 338 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 NOL4LQ96MY1 436 aaPredicted RBP10.16□□□□□ -0.78
SYNPO-204ENST00000519664 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.16□□□□□ -0.78
SYNPO-204ENST00000519664 IL17BQ9UHF5 180 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 OR5H1A6NKK0 313 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 MKRN2OSH3BPM6 223 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 NDUFA2O43678 99 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 NTF3P20783 257 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 CHRNA7P36544 502 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 TAS2R60P59551 318 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 EIF3IQ13347 325 aaKnown RBP10.16□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF345Q14585 488 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 CXorf66Q5JRM2 361 aaPredicted RBP10.16□□□□□ -0.78
SYNPO-204ENST00000519664 AQP3Q92482 292 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 RAB40CQ96S21 281 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 ANGPTL4Q9BY76 406 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 MPC1Q9Y5U8 109 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 SYNGR1O43759 233 aa10.15□□□□□ -0.78
SYNPO-204ENST00000519664 PSG2P11465 335 aa10.15□□□□□ -0.78
SYNPO-204ENST00000519664 CISD2Q8N5K1 135 aaKnown RBP10.15□□□□□ -0.78
SYNPO-204ENST00000519664 PACRGQ96M98 296 aaPredicted RBP10.15□□□□□ -0.78
SYNPO-204ENST00000519664 CIB3Q96Q77 187 aaPredicted RBP10.15□□□□□ -0.78
SYNPO-204ENST00000519664 NRIP2Q9BQI9 281 aa10.15□□□□□ -0.78
SYNPO-204ENST00000519664 LRFN3Q9BTN0 628 aa10.15□□□□□ -0.78
SYNPO-204ENST00000519664 TTTY12Q9BZ98 90 aa10.15□□□□□ -0.78
SYNPO-204ENST00000519664 SLC26A1Q9H2B4 701 aa10.15□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF107Q9UII5 783 aaPredicted RBP10.15□□□□□ -0.78
SYNPO-204ENST00000519664 OR10J4P0C629 311 aa10.15□□□□□ -0.78
SYNPO-204ENST00000519664 MUC1P15941 1255 aaPredicted RBP10.15□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF826PQ6ZT77 177 aa10.15□□□□□ -0.78
SYNPO-204ENST00000519664 EIF4E3Q8N5X7 224 aaKnown RBP10.15□□□□□ -0.78
SYNPO-204ENST00000519664 TLNRD1Q9H1K6 362 aa10.15□□□□□ -0.78
SYNPO-204ENST00000519664 OR51I2Q9H344 312 aa10.15□□□□□ -0.78
SYNPO-204ENST00000519664 A0A0U1RQV5 110 aa10.15□□□□□ -0.79
SYNPO-204ENST00000519664 A0A1W2PPE3 182 aa10.15□□□□□ -0.79
SYNPO-204ENST00000519664 C20orf202A1L168 122 aa10.15□□□□□ -0.79
SYNPO-204ENST00000519664 ATP6V0CP27449 155 aa10.15□□□□□ -0.79
SYNPO-204ENST00000519664 FHITP49789 147 aa10.15□□□□□ -0.79
SYNPO-204ENST00000519664 RBM11P57052 281 aaKnown RBP10.15□□□□□ -0.79
SYNPO-204ENST00000519664 PCOLCEQ15113 449 aa10.15□□□□□ -0.79
SYNPO-204ENST00000519664 Q8IYB0 196 aa10.15□□□□□ -0.79
SYNPO-204ENST00000519664 NTNG2Q96CW9 530 aa10.15□□□□□ -0.79
SYNPO-204ENST00000519664 ZSWIM8A7E2V4 1837 aa10.15□□□□□ -0.79
SYNPO-204ENST00000519664 RBFOX3A6NFN3 312 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 PTBP3O95758 552 aaKnown RBP10.14□□□□□ -0.79
SYNPO-204ENST00000519664 PMELP40967 661 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 RPS23P62266 143 aaKnown RBP10.14□□□□□ -0.79
SYNPO-204ENST00000519664 VAX1Q5SQQ9 334 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 LRRC75AQ8NAA5 344 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 SLC35E1Q96K37 410 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 TRGV10A0A0A0MS01 117 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 HSBP1L1C9JCN9 74 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 OR2A4O95047 310 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 SULT1A1P50225 295 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 STUMQ69YW2 141 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 ACSM6Q6P461 480 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 ZNF66Q6ZN08 573 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 ETV3LQ6ZN32 361 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 KDF1Q8NAX2 398 aaPredicted RBP10.14□□□□□ -0.79
SYNPO-204ENST00000519664 OR2A7Q96R45 310 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 GGACTQ9BVM4 153 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 PRSS50Q9UI38 385 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 SNRPCP09234 159 aaKnown RBP10.14□□□□□ -0.79
SYNPO-204ENST00000519664 ZNF17P17021 662 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 MDKP21741 143 aaPredicted RBP10.14□□□□□ -0.79
SYNPO-204ENST00000519664 CD200P41217 278 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 CFHR1Q03591 330 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 DTD1Q8TEA8 209 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 MPGP29372 298 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 G6PCP35575 357 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 LGALS4P56470 323 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 HABP2Q14520 560 aaPredicted RBP10.14□□□□□ -0.79
SYNPO-204ENST00000519664 SOSTQ9BQB4 213 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 PILRBQ9UKJ0 227 aa10.14□□□□□ -0.79
SYNPO-204ENST00000519664 MSGN1A6NI15 193 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 NKX2-8O15522 239 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 PPP1CCP36873 323 aaKnown RBP10.13□□□□□ -0.79
SYNPO-204ENST00000519664 SPCS3P61009 180 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 FOXC1Q12948 553 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 TMEM211Q6ICI0 200 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 FAM103A1Q9BTL3 118 aaKnown RBP10.13□□□□□ -0.79
SYNPO-204ENST00000519664 PIPOXQ9P0Z9 390 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 RPLP1P05386 114 aaKnown RBP10.13□□□□□ -0.79
SYNPO-204ENST00000519664 SP1P08047 785 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 COX6A1P12074 109 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 CEBPDP49716 269 aaPredicted RBP10.13□□□□□ -0.79
SYNPO-204ENST00000519664 TMEM50BP56557 158 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 STARD6P59095 220 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 RTL8BQ17RB0 113 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 TIGITQ495A1 244 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 FBXW9Q5XUX1 488 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 CMTM2Q8TAZ6 248 aa10.13□□□□□ -0.79
SYNPO-204ENST00000519664 BORCS7Q96B45 105 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms