RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 POLR2IP36954 125 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 HSPA9P38646 679 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CTRLP40313 264 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 EIF1P41567 113 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LGALS7P47929 136 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 INPP1P49441 399 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NUDT2P50583 147 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GZMMP51124 257 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NDUFA8P51970 172 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF133P52736 654 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF138P52744 262 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GFERP55789 205 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LINC01547P58512 204 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TAS2R46P59540 309 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SNAP25P60880 206 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 HSPE1P61604 102 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TIMM10P62072 90 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PPP1CAP62136 330 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SNRPD2P62316 118 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ESRRGP62508 458 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RHOBP62745 196 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RPL23P62829 140 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RAP1AP62834 184 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RPS24P62847 133 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GNB1P62873 340 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CACNG7P62955 275 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GRB2P62993 217 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CRADDP78560 199 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 HLA-DRB3P79483 266 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CXCL6P80162 114 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 HPCAP84074 193 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 FABP5Q01469 135 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CAV1Q03135 178 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 MEF2CQ06413 473 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PAX8Q06710 450 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 EGFEM1PQ0D2K5 195 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ADIGQ0VDE8 80 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM267Q0VDI3 215 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 IL15RAQ13261 267 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PNOCQ13519 176 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RUNX3Q13761 415 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PMAIP1Q13794 54 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 IRF4Q15306 451 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RGNQ15493 299 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SURF2Q15527 256 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NSDHLQ15738 373 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 MPPED2Q15777 294 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SSX1Q16384 188 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GUCA2BQ16661 112 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NDUFA5Q16718 116 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GSG1Q2KHT4 349 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PLPPR5Q32ZL2 321 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SMIM21Q3B7S5 101 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TIMM50Q3ZCQ8 353 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 Q499Y3 187 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SCGB2B2Q4G0G5 96 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 C6orf99Q4VX62 202 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ORMDL2Q53FV1 153 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LRRC10Q5BKY1 277 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 UBE2NLQ5JXB2 153 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CLLU1OSQ5K130 101 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ATAD3CQ5T2N8 411 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 IBA57Q5T440 356 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 C1orf194Q5T5A4 169 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 C9orf64Q5T6V5 341 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM78Q5T7P6 136 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM222AQ5U5X8 452 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SPATA31B1PQ5VZV4 182 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM236Q5W0B7 351 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 FBXW9Q5XUX1 488 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM215Q68D42 235 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LEMD1Q68G75 181 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 KDM4DQ6B0I6 523 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZFAND6Q6FIF0 208 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GLYATQ6IB77 296 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LCN8Q6JVE9 175 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NANOGP8Q6NSW7 305 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RPL13AP3Q6NVV1 102 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GUSBP11Q6P575 273 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 DCUN1D2Q6PH85 259 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 XKRXQ6PP77 449 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PLET1Q6UQ28 207 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM205Q6UW68 189 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 C5orf46Q6UWT4 87 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PAMR1Q6UXH9 720 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CLEC19AQ6UXS0 136 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ALKAL1Q6UXT8 129 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 FBXW12Q6X9E4 464 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF493Q6ZR52 646 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 Q6ZR54 194 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 Q6ZRU5 148 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 Q6ZSR6 202 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMPPEQ6ZT21 453 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CLEC20AQ6ZU45 233 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LINC00173Q6ZV60 143 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GOLT1AQ6ZVE7 132 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF771Q7L3S4 317 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC16A13Q7RTY0 426 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF550Q7Z398 422 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NEGR1Q7Z3B1 354 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms