RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 OR7C2O60412 319 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FCGR3BO75015 233 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 PGLYRP1O75594 196 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 CYB5R3P00387 301 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 CEACAM21Q3KPI0 293 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 BTNL3Q6UXE8 466 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 RTN4RL2Q86UN3 420 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 MRPL30Q8TCC3 161 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 CORO2AQ92828 525 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 MANBALQ9NQG1 85 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 ATP23Q9Y6H3 246 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 IGSF23A1L1A6 192 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 DVL1O14640 695 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 CYC1P08574 325 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 SUPT4H1P63272 117 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 SERF2P84101 59 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 ZNF818PQ6ZRF7 136 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 RBMXL3Q8N7X1 1067 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 DTD1Q8TEA8 209 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 GPR146Q96CH1 333 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 MARS2Q96GW9 593 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 MEGF10Q96KG7 1140 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 MESP1Q9BRJ9 268 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 GSN-AS1Q9NRJ2 163 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 C11orf94C9JXX5 98 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 PAGE4O60829 102 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 PKIAP61925 76 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 C3AR1Q16581 482 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 ZNF343Q6P1L6 599 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 DEFB108BQ8NET1 73 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 CT55Q8WUE5 264 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 MS4A10Q96PG2 267 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 GPR61Q9BZJ8 451 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 ZNF586Q9NXT0 402 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FUT9Q9Y231 359 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 R4GN57 208 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 COL4A6Q14031 1691 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 IGKV1D-8A0A087WSZ0 117 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 TRGV5A0A0B4J1U4 118 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 A0A1W2PQM1 296 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A10PA6NDY2 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A18PA6NE21 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A16PA6NEW6 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A20PA6NIJ5 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A8PA6NJQ4 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A7PA6NKC0 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A22PA8MWA6 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A12PA8MX19 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A5PA8MXJ8 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A23PA8MXZ1 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 CLN5O75503 358 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A15PP0C7V4 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A13PP0C7W8 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A14PP0C7W9 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM90A24PP0C7X0 464 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 MEOX1P50221 254 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 TPPP2P59282 170 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 DMWDQ09019 674 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 IGFBP7Q16270 282 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 ZNF439Q8NDP4 499 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 NFAM1Q8NET5 270 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 OR5D13Q8NGL4 314 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 ANAPC16Q96DE5 110 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 GGACTQ9BVM4 153 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 WNT5BQ9H1J7 359 aa7.26□□□□□ -1.25
LIMCH1-216ENST00000512820 MDC1Q14676 2089 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 CCL1P22362 96 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 G6PCP35575 357 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 MAGEA5P43359 124 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 ERVFC1-1P60608 527 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 B2MP61769 119 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 HABP2Q14520 560 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 PCOLCEQ15113 449 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 TOMM20LQ6UXN7 152 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 C16orf82Q7Z2V1 217 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 RNF144BQ7Z419 303 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 LINC00596Q86U02 117 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM131CQ96AQ9 280 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 LYZL4Q96KX0 146 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 DMRTA2Q96SC8 542 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 CHCHD2Q9Y6H1 151 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 CTXND1A0A1B0GTU2 59 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 CXorf65A6NEN9 183 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 LINC00587B1AMM8 73 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 SYNGR1O43759 233 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 ACAA1P09110 424 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 NTF3P20783 257 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 G0S2P27469 103 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 PLGLAQ15195 96 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 IZUMO4Q1ZYL8 232 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 HIKESHIQ53FT3 197 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 SLC25A53Q5H9E4 307 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 LHFPL1Q86WI0 220 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 HS3ST3B1Q9Y662 390 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 PLXNA2O75051 1894 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 CD5P06127 495 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 FOSL1P15407 271 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 CFPP27918 469 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 TAS2R45P59539 299 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 CD81P60033 236 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms