RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 NMSQ5H8A3 153 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 TMPRSS7Q7RTY8 843 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 VASH2Q86V25 355 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ZDHHC23Q8IYP9 409 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CLEC18CQ8NCF0 446 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 TAAR9Q96RI9 348 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 MAGT1Q9H0U3 335 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SLC35B3Q9H1N7 401 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 PLEKHF2Q9H8W4 249 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 GLRX2Q9NS18 164 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 LYRM2Q9NU23 88 aaPredicted RBP13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 BOKQ9UMX3 212 aaPredicted RBP13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 A0A1B0GV50 99 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 UMAD1C9J7I0 102 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SSSCA1O60232 199 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 NEURL1O76050 574 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 NGFP01138 241 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 UCP1P25874 307 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CCL20P78556 96 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 C21orf62-AS1Q17RA5 79 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SPSB3Q6PJ21 355 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 OR2M7Q8NG81 312 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ISOC2Q96AB3 205 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SPIN2AQ99865 258 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SPIN2BQ9BPZ2 258 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 C2orf88Q9BSF0 95 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ZNF703Q9H7S9 590 aaPredicted RBP13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CCL28Q9NRJ3 127 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 HSPB6O14558 160 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SYNGR1O43759 233 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 IFNA10P01566 189 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 MT-ND4LP03901 98 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 AGAP20933 346 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ID3Q02535 119 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 MPV17LQ2QL34 196 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ATP1A1-AS1Q5TC04 95 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SP5Q6BEB4 398 aaPredicted RBP13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 MRPL21Q7Z2W9 205 aaKnown RBP13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ABHD14BQ96IU4 210 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 THOC3Q96J01 351 aaKnown RBP13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 RARRES2Q99969 163 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 GGACTQ9BVM4 153 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 HES7Q9BYE0 225 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CALHM2Q9HA72 323 aa13.73□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPH5 198 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 A6NLC8 198 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 M0R036 132 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 HSD17B6O14756 317 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 LY86O95711 162 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 IGHV2-5P01817 119 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 RAB4AP20338 218 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 OMGP23515 440 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 PLA2G5P39877 138 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ZNF266Q14584 549 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 PCSK4Q6UW60 755 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 C20orf204Q6ZNR8 217 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 LFNGQ8NES3 379 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 OR2G3Q8NGZ4 309 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 APOBEC3DQ96AK3 386 aaPredicted RBP13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 PBDC1Q9BVG4 233 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SPRY4Q9C004 299 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ZNF552Q9H707 407 aaPredicted RBP13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ATP23Q9Y6H3 246 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 MAP1BP46821 2468 aaKnown RBP13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 OR13C7P0DN81 318 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 MRPL30Q8TCC3 161 aaKnown RBP13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 FAM173AQ9BQD7 235 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 KCNJ16Q9NPI9 418 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 IL17BQ9UHF5 180 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ZNF407Q9C0G0 2248 aa13.72□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPE3 182 aa13.71□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 DUXBA0A1W2PPF3 345 aa13.71□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 TRAPPC2LH3BP13 241 aa13.71□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 EPHA1P21709 976 aa13.71□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 MKXQ8IYA7 352 aa13.71□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 POM121L2Q96KW2 1035 aa13.71□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SLC25A31Q9H0C2 315 aa13.71□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ASCL3Q9NQ33 180 aa13.71□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 KIR2DS1A0A191URI9 304 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 CDRT15L2A8MXV6 281 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 C3orf80F5H4A9 247 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 VDAC1P21796 283 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 KIR2DS4P43632 304 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 DYNLT3P51808 116 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 PAX9P55771 341 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 BPIFB3P59826 476 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 KIR2DS1Q14954 304 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 TMEM164Q5U3C3 297 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ZFP62Q8NB50 900 aaPredicted RBP13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 SUMF2Q8NBJ7 301 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 OR5A2Q8NGI9 324 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 OR5C1Q8NGR4 320 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ZNF488Q96MN9 340 aa13.71□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 TCAPO15273 167 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 LILRA1O75019 489 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 PGLYRP1O75594 196 aaPredicted RBP13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 CST7O76096 145 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ARG1P05089 322 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ITGA3P26006 1051 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 SULT1A1P50225 295 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms