RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 MMP9P14780 707 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 GPR87Q9BY21 358 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 VSIRQ9H7M9 311 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 A0A0G2JRQ6 117 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 HERPUD1Q15011 391 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 C20orf204Q6ZNR8 217 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 NECAP1Q8NC96 275 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 OR10D4PQ8NGN7 298 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 TCTEX1D2Q8WW35 142 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 POM121L2Q96KW2 1035 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 SYT3Q9BQG1 590 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 PBDC1Q9BVG4 233 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 LINC00470Q9BZP3 86 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 PRO1933Q9H354 126 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 TMPRSS5Q9H3S3 457 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 CD300LBA8K4G0 201 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 K7N7A8 449 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 RHBDL1O75783 438 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 TRGC2P03986 189 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 CELA3BP08861 270 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 BMP5P22003 454 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 RAB11AP62491 216 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 GCNT2Q8N0V5 402 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 TMEM252Q8N6L7 170 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 GGACTQ9BVM4 153 aa14.09□□□□□ -0.15
CCDC88B-210ENST00000494566 C21orf140B9A014 251 aa14.08□□□□□ -0.15
CCDC88B-210ENST00000494566 RPL36A-HNRNPH2H7BZ11 118 aa14.08□□□□□ -0.15
CCDC88B-210ENST00000494566 IL18BPO95998 194 aa14.08□□□□□ -0.15
CCDC88B-210ENST00000494566 SMIM6P0DI80 62 aa14.08□□□□□ -0.15
CCDC88B-210ENST00000494566 SELEP16581 610 aa14.08□□□□□ -0.15
CCDC88B-210ENST00000494566 CA6P23280 308 aa14.08□□□□□ -0.15
CCDC88B-210ENST00000494566 EIF2S3P41091 472 aaKnown RBP14.08□□□□□ -0.15
CCDC88B-210ENST00000494566 CEACAM21Q3KPI0 293 aa14.08□□□□□ -0.15
CCDC88B-210ENST00000494566 ZNF429Q86V71 674 aa14.08□□□□□ -0.15
CCDC88B-210ENST00000494566 APOBEC3DQ96AK3 386 aaPredicted RBP14.08□□□□□ -0.15
CCDC88B-210ENST00000494566 PFDN5Q99471 154 aa14.08□□□□□ -0.15
CCDC88B-210ENST00000494566 GPR61Q9BZJ8 451 aa14.08□□□□□ -0.15
CCDC88B-210ENST00000494566 CACNA1GO43497 2377 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 IFITM10A6NMD0 228 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 TRAPPC2LH3BP13 241 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 RPL23AP62750 156 aaKnown RBP14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 OR2B11Q5JQS5 317 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 TMEM211Q6ICI0 200 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 DPPA2Q7Z7J5 298 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 SPRR3Q9UBC9 169 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 ELLP55199 621 aaPredicted RBP14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 PYY3Q5JQD4 70 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 ZNF880Q6PDB4 577 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 SPSB3Q6PJ21 355 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 OR5T1Q8NG75 326 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 GALNT14Q96FL9 552 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 SUCNR1Q9BXA5 334 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 DOK5Q9P104 306 aa14.08□□□□□ -0.16
CCDC88B-210ENST00000494566 IGKV1-6A0A0C4DH72 117 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 FGF12P61328 243 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 ERVS71-1P61550 626 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 SLC10A1Q14973 349 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 PLA2G2CQ5R387 149 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 ZNF383Q8NA42 475 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 LYPD6BQ8NI32 183 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 EGLN1Q9GZT9 426 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 POMT1Q9Y6A1 747 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 TNRC6AQ8NDV7 1962 aaKnown RBP14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 IGHV2-5P01817 119 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 FOLR2P14207 255 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 TUBG1P23258 451 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 PLP2Q04941 152 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 FAM53AQ6NSI3 398 aaPredicted RBP14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 MDP1Q86V88 176 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 OR4D5Q8NGN0 318 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 SSX3Q99909 188 aa14.07□□□□□ -0.16
CCDC88B-210ENST00000494566 S100A8P05109 93 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 DEFA4P12838 97 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 ARG2P78540 354 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 AKR1C8PQ5T2L2 129 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 CMTM1Q8IZ96 169 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 HIST1H2AAQ96QV6 131 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 TOLLIPQ9H0E2 274 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 ZNF665Q9H7R5 613 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 Q9N2K0 584 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 PPP1R3CQ9UQK1 317 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 RBM7Q9Y580 266 aaKnown RBP14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 WSB1Q9Y6I7 421 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 CXorf65A6NEN9 183 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 IFNA17P01571 189 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 METTL15P1P0C7V9 234 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 APLNRP35414 380 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 RAB2AP61019 212 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 CLN3Q13286 438 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 BEND4Q6ZU67 534 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 ODF3L1Q8IXM7 274 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 SELENOHQ8IZQ5 122 aaKnown RBP14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 MDS2Q8NDY4 140 aa14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 METTL1Q9UBP6 276 aaKnown RBP14.06□□□□□ -0.16
CCDC88B-210ENST00000494566 TRDCB7Z8K6 153 aa14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 NRN1LQ496H8 165 aa14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 WDR25Q64LD2 544 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 MKXQ8IYA7 352 aa14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 IL13RA2Q14627 380 aa14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 ALKBH6Q3KRA9 238 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms