RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 IFNA5P01569 189 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 IGKV1D-12P01611 117 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 MBP02144 154 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 BCL2P10415 239 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 PAX1P15863 534 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 HIST1H1BP16401 226 aaKnown RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 ZNF32P17041 273 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 F2RP25116 425 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 S100A2P29034 98 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 HOXC12P31275 282 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 ARR3P36575 388 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 NOVA1P51513 510 aaKnown RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 CARD18P57730 90 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 SSTP61278 116 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 HLA-DRB3P79483 266 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 PSG4Q00888 419 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 PRDX4Q13162 271 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 FOXE3Q13461 319 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 DAZAP2Q15038 168 aaPredicted RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 ATP6V1FQ16864 119 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 PHYHD1Q5SRE7 291 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 LCN10Q6JVE6 187 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 TEPPQ6URK8 271 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 RBMS3Q6XE24 437 aaKnown RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 C16orf47Q6ZP98 133 aaPredicted RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 AAED1Q7RTV5 226 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 MRGPRGQ86SM5 289 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 ZNF429Q86V71 674 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 C1orf87Q8N0U7 546 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 LINC00469Q8N7U9 141 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 ZNF611Q8N823 705 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 ZNF610Q8N9Z0 462 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 OR52M1Q8NGK5 317 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 RNASEH2CQ8TDP1 164 aaKnown RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 C2CD4CQ8TF44 421 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 THAP3Q8WTV1 239 aaPredicted RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 EXTL1Q92935 676 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 TOMM40LQ969M1 308 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 APOBEC3DQ96AK3 386 aaPredicted RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 DNAJA3Q96EY1 480 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 IP6K3Q96PC2 410 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 TP53RKQ96S44 253 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 TXNDC17Q9BRA2 123 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 PYGO2Q9BRQ0 406 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 ZPBPQ9BS86 351 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 ZNF442Q9H7R0 627 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 CRLF2Q9HC73 371 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 GPR35Q9HC97 309 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 NIT2Q9NQR4 276 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 LIN7CQ9NUP9 197 aaKnown RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 GAR1Q9NY12 217 aaKnown RBP4.97□□□□□ -1.61
VPS41-214ENST00000490924 TINAGQ9UJW2 476 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 OR2W1Q9Y3N9 320 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 REV3LO60673 3130 aa4.97□□□□□ -1.61
VPS41-214ENST00000490924 CACNA1EQ15878 2313 aa4.96□□□□□ -1.61
VPS41-214ENST00000490924 IGSF23A1L1A6 192 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 C5orf63A6NC05 138 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 NKX2-6A6NCS4 301 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 SLC22A20A6NK97 555 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 PPP1R2P9O14990 202 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 TXNL1O43396 289 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 CLN5O75503 358 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 OR7C1O76099 320 aaPredicted RBP4.96□□□□□ -1.62
VPS41-214ENST00000490924 VENTXO95231 258 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 CNOT4O95628 575 aaKnown RBP4.96□□□□□ -1.62
VPS41-214ENST00000490924 PTBP3O95758 552 aaKnown RBP4.96□□□□□ -1.62
VPS41-214ENST00000490924 SCGB1D2O95969 90 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 P04436 131 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 UMODP07911 640 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 CCL3P10147 92 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 CD99P14209 185 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 TUBG1P23258 451 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 ANOS1P23352 680 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 OPRM1P35372 400 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 CEACAM6P40199 344 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 GFRA1P56159 465 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 UBE2KP61086 200 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 PAX5Q02548 391 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 NHLH2Q02577 135 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 ZFP36L1Q07352 338 aaKnown RBP4.96□□□□□ -1.62
VPS41-214ENST00000490924 KIAA0141Q14154 515 aaPredicted RBP4.96□□□□□ -1.62
VPS41-214ENST00000490924 ELOBQ15370 118 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 HYAL4Q2M3T9 481 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 KRBOX4Q5JUW0 171 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 PLCXD3Q63HM9 321 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 ADAM5Q6NVV9 412 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 ZNF774Q6NX45 483 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 TMEM182Q6ZP80 229 aaPredicted RBP4.96□□□□□ -1.62
VPS41-214ENST00000490924 SHISA6Q6ZSJ9 500 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 TBC1D26Q86UD7 250 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 ZNF573Q86YE8 665 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 FOXRED2Q8IWF2 684 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 ZDHHC23Q8IYP9 409 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 FAM24BQ8N5W8 94 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 WDR31Q8NA23 367 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 HSD17B11Q8NBQ5 300 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 OR5L1Q8NGL2 311 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 OR5C1Q8NGR4 320 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 OR5R1Q8NH85 324 aa4.96□□□□□ -1.62
VPS41-214ENST00000490924 NANPQ8TBE9 248 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms