RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 IL3RAP26951 378 aa11.89□□□□□ -0.51
LIMS3-205ENST00000487150 DYNLT3P51808 116 aa11.89□□□□□ -0.51
LIMS3-205ENST00000487150 HLA-DRB5Q30154 266 aa11.89□□□□□ -0.51
LIMS3-205ENST00000487150 OR10R2Q8NGX6 335 aa11.89□□□□□ -0.51
LIMS3-205ENST00000487150 OR4K15Q8NH41 348 aa11.89□□□□□ -0.51
LIMS3-205ENST00000487150 CCDC107Q8WV48 283 aa11.89□□□□□ -0.51
LIMS3-205ENST00000487150 GALMQ96C23 342 aa11.89□□□□□ -0.51
LIMS3-205ENST00000487150 KCTD12Q96CX2 325 aaKnown RBP11.89□□□□□ -0.51
LIMS3-205ENST00000487150 CMSS1Q9BQ75 279 aaKnown RBP11.89□□□□□ -0.51
LIMS3-205ENST00000487150 FAAP24Q9BTP7 215 aa11.89□□□□□ -0.51
LIMS3-205ENST00000487150 MMP28Q9H239 520 aa11.89□□□□□ -0.51
LIMS3-205ENST00000487150 TAF9BQ9HBM6 251 aa11.89□□□□□ -0.51
LIMS3-205ENST00000487150 GNG12Q9UBI6 72 aa11.89□□□□□ -0.51
LIMS3-205ENST00000487150 JPT1Q9UK76 154 aa11.89□□□□□ -0.51
LIMS3-205ENST00000487150 A0A0A6YYD4 124 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 SMIM30A4D0T7 59 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 FOXI3A8MTJ6 420 aaPredicted RBP11.88□□□□□ -0.51
LIMS3-205ENST00000487150 C12orf77C9JDV5 145 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 NOL3O60936 208 aaKnown RBP11.88□□□□□ -0.51
LIMS3-205ENST00000487150 MMP23AO75900 390 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 GABARAPO95166 117 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 NAPSAO96009 420 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 IGLV1-47P01700 117 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 HBZP02008 142 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 CD3GP09693 182 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 SLC2A2P11168 524 aaPredicted RBP11.88□□□□□ -0.51
LIMS3-205ENST00000487150 HIST1H1DP16402 221 aaKnown RBP11.88□□□□□ -0.51
LIMS3-205ENST00000487150 BRS3P32247 399 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 MNDAP41218 407 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 HTD2P86397 168 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 MADCAM1Q13477 382 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 IDNKQ5T6J7 187 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 ANKRD13BQ86YJ7 626 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 OR4P4Q8NGL7 312 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 OR10X1Q8NGY0 326 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 RFESDQ8TAC1 157 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 MRPL30Q8TCC3 161 aaKnown RBP11.88□□□□□ -0.51
LIMS3-205ENST00000487150 LGALS14Q8TCE9 139 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 ARHGAP5-AS1Q96IT6 56 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 BCL7BQ9BQE9 202 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 PECRQ9BY49 303 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 ATG5Q9H1Y0 275 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 ZNF286AQ9HBT8 521 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 GFOD1Q9NXC2 390 aa11.88□□□□□ -0.51
LIMS3-205ENST00000487150 MXRA5Q9NR99 2828 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 J3QR06 171 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 IGHV4-59P01825 116 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 KIR2DS4P43632 304 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 PITPNAQ00169 270 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 KIR2DS1Q14954 304 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 HMGN3Q15651 99 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 SSX2Q16385 188 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 LTC4SQ16873 150 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 PRR18Q8N4B5 295 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 AP3S1Q92572 193 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 GCDHQ92947 438 aaPredicted RBP11.87□□□□□ -0.51
LIMS3-205ENST00000487150 SLC25A46Q96AG3 418 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 RPEQ96AT9 228 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 DUX5Q96PT3 197 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 SSX3Q99909 188 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 CHIAQ9BZP6 476 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 RNF167Q9H6Y7 350 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.87□□□□□ -0.51
LIMS3-205ENST00000487150 RHBDL2Q9NX52 303 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 AK3Q9UIJ7 227 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 SCOCQ9UIL1 159 aa11.87□□□□□ -0.51
LIMS3-205ENST00000487150 SOX21Q9Y651 276 aaPredicted RBP11.87□□□□□ -0.51
LIMS3-205ENST00000487150 A0A0B4J203 849 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 TRAV39A0A0B4J263 110 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 A0A1B0GUS0 222 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 BUB1B-PAK6H3BSN5 160 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 RAB27BO00194 218 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 TXNL1O43396 289 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 DIRAS3O95661 229 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 GSTP1P09211 210 aaKnown RBP11.86□□□□□ -0.51
LIMS3-205ENST00000487150 SNRPBP14678 240 aaKnown RBP11.86□□□□□ -0.51
LIMS3-205ENST00000487150 RCC1P18754 421 aaPredicted RBP11.86□□□□□ -0.51
LIMS3-205ENST00000487150 TALDO1P37837 337 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 GDNFP39905 211 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 RPL5P46777 297 aaKnown RBP11.86□□□□□ -0.51
LIMS3-205ENST00000487150 ALDH3B2P48448 385 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 SERPINB10P48595 397 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 RAB7AP51149 207 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 LSM3P62310 102 aaKnown RBP11.86□□□□□ -0.51
LIMS3-205ENST00000487150 FOXL1Q12952 345 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 ZNF880Q6PDB4 577 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 LHFPL4Q7Z7J7 247 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 LINC00311Q8N616 119 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.86□□□□□ -0.51
LIMS3-205ENST00000487150 SPATA3Q8NHX4 192 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 SETD6Q8TBK2 473 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 ACOT12Q8WYK0 555 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 TOMM40LQ969M1 308 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 OR2S2Q9NQN1 319 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 SPATA2Q9UM82 520 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 PSG11Q9UQ72 335 aa11.86□□□□□ -0.51
LIMS3-205ENST00000487150 FAM172BPA6NC97 362 aa11.85□□□□□ -0.51
LIMS3-205ENST00000487150 H3BUX3 64 aa11.85□□□□□ -0.51
LIMS3-205ENST00000487150 MFNGO00587 321 aa11.85□□□□□ -0.51
LIMS3-205ENST00000487150 GPR137BO60478 399 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 168.5 ms