RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 TRBV5-7A0A0A0MS05 114 aa17■□□□□ 0.31
USP40-215ENST00000484528 WI2-2373I1.2A0A1W2PRP0 233 aa17■□□□□ 0.31
USP40-215ENST00000484528 ZNF736B4DX44 427 aaPredicted RBP17■□□□□ 0.31
USP40-215ENST00000484528 ORC5O43913 435 aa17■□□□□ 0.31
USP40-215ENST00000484528 GPX5O75715 221 aa17■□□□□ 0.31
USP40-215ENST00000484528 THBS3P49746 956 aa17■□□□□ 0.31
USP40-215ENST00000484528 ADARB1P78563 741 aaKnown RBP17■□□□□ 0.31
USP40-215ENST00000484528 DOC2BQ14184 412 aa17■□□□□ 0.31
USP40-215ENST00000484528 EBI3Q14213 229 aa17■□□□□ 0.31
USP40-215ENST00000484528 SYT6Q5T7P8 510 aaPredicted RBP17■□□□□ 0.31
USP40-215ENST00000484528 RAB12Q6IQ22 244 aa17■□□□□ 0.31
USP40-215ENST00000484528 FOXRED2Q8IWF2 684 aa17■□□□□ 0.31
USP40-215ENST00000484528 STPG2Q8N412 459 aa17■□□□□ 0.31
USP40-215ENST00000484528 DHRSXQ8N5I4 330 aa17■□□□□ 0.31
USP40-215ENST00000484528 LINC00311Q8N616 119 aa17■□□□□ 0.31
USP40-215ENST00000484528 RTN4IP1Q8WWV3 396 aaPredicted RBP17■□□□□ 0.31
USP40-215ENST00000484528 DUX3Q96PT4 197 aa17■□□□□ 0.31
USP40-215ENST00000484528 GNG12Q9UBI6 72 aa17■□□□□ 0.31
USP40-215ENST00000484528 TRAPPC2LQ9UL33 140 aa17■□□□□ 0.31
USP40-215ENST00000484528 MCRIP1C9JLW8 97 aa16.99■□□□□ 0.31
USP40-215ENST00000484528 DUS4LO95620 317 aaKnown RBP16.99■□□□□ 0.31
USP40-215ENST00000484528 IL3RAP26951 378 aa16.99■□□□□ 0.31
USP40-215ENST00000484528 VHLP40337 213 aa16.99■□□□□ 0.31
USP40-215ENST00000484528 SLC35B1P78383 322 aa16.99■□□□□ 0.31
USP40-215ENST00000484528 GPR176Q14439 515 aa16.99■□□□□ 0.31
USP40-215ENST00000484528 Q8N6K4 173 aa16.99■□□□□ 0.31
USP40-215ENST00000484528 OR2T10Q8NGZ9 312 aa16.99■□□□□ 0.31
USP40-215ENST00000484528 OR1L1Q8NH94 360 aa16.99■□□□□ 0.31
USP40-215ENST00000484528 ST6GALNAC6Q969X2 333 aa16.99■□□□□ 0.31
USP40-215ENST00000484528 SPACA1Q9HBV2 294 aa16.99■□□□□ 0.31
USP40-215ENST00000484528 COL7A1Q02388 2944 aa16.99■□□□□ 0.31
USP40-215ENST00000484528 GNAO1P09471 354 aa16.98■□□□□ 0.31
USP40-215ENST00000484528 GPR12P47775 334 aa16.98■□□□□ 0.31
USP40-215ENST00000484528 LCNL1Q6ZST4 164 aa16.98■□□□□ 0.31
USP40-215ENST00000484528 AHSA2Q719I0 299 aa16.98■□□□□ 0.31
USP40-215ENST00000484528 TGIF2LXQ8IUE1 241 aa16.98■□□□□ 0.31
USP40-215ENST00000484528 C8orf31Q8N9H6 132 aa16.98■□□□□ 0.31
USP40-215ENST00000484528 Q8N9W7 124 aa16.98■□□□□ 0.31
USP40-215ENST00000484528 ZNF439Q8NDP4 499 aa16.98■□□□□ 0.31
USP40-215ENST00000484528 TMEM104Q8NE00 496 aa16.98■□□□□ 0.31
USP40-215ENST00000484528 DERL3Q96Q80 235 aa16.98■□□□□ 0.31
USP40-215ENST00000484528 SELENOIQ9C0D9 397 aa16.98■□□□□ 0.31
USP40-215ENST00000484528 PEX16Q9Y5Y5 336 aa16.98■□□□□ 0.31
USP40-215ENST00000484528 SPINT2O43291 252 aa16.97■□□□□ 0.31
USP40-215ENST00000484528 CRTAPO75718 401 aaPredicted RBP16.97■□□□□ 0.31
USP40-215ENST00000484528 HBZP02008 142 aa16.97■□□□□ 0.31
USP40-215ENST00000484528 MGMTP16455 207 aa16.97■□□□□ 0.31
USP40-215ENST00000484528 RCC1P18754 421 aaPredicted RBP16.97■□□□□ 0.31
USP40-215ENST00000484528 CELP19835 753 aa16.97■□□□□ 0.31
USP40-215ENST00000484528 TAS2R43P59537 309 aa16.97■□□□□ 0.31
USP40-215ENST00000484528 RCN1Q15293 331 aa16.97■□□□□ 0.31
USP40-215ENST00000484528 DEFB121Q5J5C9 76 aa16.97■□□□□ 0.31
USP40-215ENST00000484528 LAIR2Q6ISS4 152 aa16.97■□□□□ 0.31
USP40-215ENST00000484528 PACRGLQ8N7B6 248 aa16.97■□□□□ 0.31
USP40-215ENST00000484528 ABCG5Q9H222 651 aa16.97■□□□□ 0.31
USP40-215ENST00000484528 LIN7CQ9NUP9 197 aaKnown RBP16.97■□□□□ 0.31
USP40-215ENST00000484528 UBE2QL1A1L167 161 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 EFCAB10A6NFE3 127 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 AP4M1O00189 453 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 MYL12BO14950 172 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 ZNF134P52741 427 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 CT45A1Q5HYN5 189 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 C6orf183Q5T699 404 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 SLC25A48Q6ZT89 311 aaKnown RBP16.96■□□□□ 0.31
USP40-215ENST00000484528 C5orf24Q7Z6I8 188 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 ZNF695Q8IW36 515 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 CT45A3Q8NHU0 189 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 DPF1Q92782 380 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 FAM46BQ96A09 425 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 PLSCR3Q9NRY6 295 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 ZFP57Q9NU63 452 aa16.96■□□□□ 0.31
USP40-215ENST00000484528 MOSP00540 346 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 RPLP1P05386 114 aaKnown RBP16.95■□□□□ 0.3
USP40-215ENST00000484528 CD1BP29016 333 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 CAPGP40121 348 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 RAB25P57735 213 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 EGFEM1PQ0D2K5 195 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 GNMTQ14749 295 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 SIGIRRQ6IA17 410 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 C8orf59Q8N0T1 100 aaPredicted RBP16.95■□□□□ 0.3
USP40-215ENST00000484528 COMMD1Q8N668 190 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 TFAP2CQ92754 450 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 MRPS24Q96EL2 167 aaKnown RBP16.95■□□□□ 0.3
USP40-215ENST00000484528 Q96M66 194 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 S1PR3Q99500 378 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 P2RX4Q99571 388 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 HSPB9Q9BQS6 159 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 PSORS1C1Q9UIG5 152 aa16.95■□□□□ 0.3
USP40-215ENST00000484528 MYCNOSP40205 109 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 WNT4P56705 351 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 INSL4Q14641 139 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 DEFB136Q30KP8 78 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 Q3ZCU0 254 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 C11orf87Q6NUJ2 197 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 TEX38Q6PEX7 206 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 LYPD6Q86Y78 171 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 GAPTQ8N292 157 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 BPIFB6Q8NFQ5 453 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 RASL11BQ9BPW5 248 aa16.94■□□□□ 0.3
USP40-215ENST00000484528 GPR61Q9BZJ8 451 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms