RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 H3BTX0 84 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 IFNL4K9M1U5 179 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 C1QTNF9P0C862 333 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 PGA4P0DJD7 388 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 PGA3P0DJD8 388 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 SUCLG1P53597 346 aaKnown RBP4.31□□□□□ -1.72
CCDC39-204ENST00000476379 EWSR1Q01844 656 aaKnown RBP eCLIP4.31□□□□□ -1.72
CCDC39-204ENST00000476379 TFAP2EQ6VUC0 442 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 ARRDC1Q8N5I2 433 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 CLEC18CQ8NCF0 446 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 ABHD5Q8WTS1 349 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 AQP3Q92482 292 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 NTNG2Q96CW9 530 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 TRIB1Q96RU8 372 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 UQCC2Q9BRT2 126 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 RTBDNQ9BSG5 229 aaPredicted RBP4.31□□□□□ -1.72
CCDC39-204ENST00000476379 ZNF552Q9H707 407 aaPredicted RBP4.31□□□□□ -1.72
CCDC39-204ENST00000476379 NAA60Q9H7X0 242 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 PSG11Q9UQ72 335 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 RAXQ9Y2V3 346 aa4.31□□□□□ -1.72
CCDC39-204ENST00000476379 ANKHD1Q8IWZ3 2542 aaKnown RBP4.3□□□□□ -1.72
CCDC39-204ENST00000476379 CELSR1Q9NYQ6 3014 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 A8MXK9 166 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 WNT9BO14905 357 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 SPRY3O43610 288 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 PLAUP00749 431 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 CST4P01036 141 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 PRB1P04280 392 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 CD55P08174 381 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 GSTP1P09211 210 aaKnown RBP4.3□□□□□ -1.72
CCDC39-204ENST00000476379 FAM87AP0C7U9 286 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 PGA5P0DJD9 388 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 TDGF1P13385 188 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 COL8A2P25067 703 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 RPL29P47914 159 aaKnown RBP4.3□□□□□ -1.72
CCDC39-204ENST00000476379 REG1BP48304 166 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 LY6DQ14210 128 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 Q3ZCU0 254 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 LPCAT3Q6P1A2 487 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 LINC00114Q6XXX2 140 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 HOGA1Q86XE5 327 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 DTX1Q86Y01 620 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 KIR3DL3Q8N743 410 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 NHLRC2Q8NBF2 726 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 OR2M3Q8NG83 312 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 RAB39BQ96DA2 213 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 KCNIP1Q9NZI2 227 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 B3GAT1Q9P2W7 334 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 NDRG3Q9UGV2 375 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 POMT1Q9Y6A1 747 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 A0A1B0GTI1 187 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 LILRA5A6NI73 299 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 YKT6O15498 198 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 LILRA1O75019 489 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 FCGR3AP08637 254 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 RAB5AP20339 215 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 HGFACQ04756 655 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 PDLIM3Q53GG5 364 aaPredicted RBP4.3□□□□□ -1.72
CCDC39-204ENST00000476379 DCAF12Q5T6F0 453 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 RHBDD2Q6NTF9 364 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 POC1BQ8TC44 478 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 RPS4Y2Q8TD47 263 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 GATAD1Q8WUU5 269 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 ZNF764Q96H86 408 aaPredicted RBP4.3□□□□□ -1.72
CCDC39-204ENST00000476379 LYZL4Q96KX0 146 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 UTP23Q9BRU9 249 aaKnown RBP4.3□□□□□ -1.72
CCDC39-204ENST00000476379 TOLLIPQ9H0E2 274 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 OR2D2Q9H210 308 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 ARV1Q9H2C2 271 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 IFT22Q9H7X7 185 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 PLEKHA3Q9HB20 300 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 PRSS50Q9UI38 385 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 TIMM10BQ9Y5J6 103 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 KPTNQ9Y664 436 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 NUP210Q8TEM1 1887 aaPredicted RBP4.3□□□□□ -1.72
CCDC39-204ENST00000476379 A0A1B0GV90 55 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 GRIFINA4D1Z8 144 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 OR5H1A6NKK0 313 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 K7EM74 188 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 FUT3P21217 361 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 SUPT4H1P63272 117 aaKnown RBP4.3□□□□□ -1.72
CCDC39-204ENST00000476379 H3F3AP84243 136 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 ZNF818PQ6ZRF7 136 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 ZDHHC22Q8N966 263 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 H1FXQ92522 213 aaKnown RBP4.3□□□□□ -1.72
CCDC39-204ENST00000476379 RND1Q92730 232 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 OR2J1Q9GZK6 312 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 VSIRQ9H7M9 311 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 MTCH1Q9NZJ7 389 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 ABI3Q9P2A4 366 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 NACAE9PAV3 2078 aa4.3□□□□□ -1.72
CCDC39-204ENST00000476379 IGKV1D-13A0A0B4J2D9 117 aa4.29□□□□□ -1.72
CCDC39-204ENST00000476379 ZNF320A2RRD8 509 aa4.29□□□□□ -1.72
CCDC39-204ENST00000476379 E9PQ18 207 aa4.29□□□□□ -1.72
CCDC39-204ENST00000476379 H7BYZ3 331 aa4.29□□□□□ -1.72
CCDC39-204ENST00000476379 ACAA1P09110 424 aaPredicted RBP4.29□□□□□ -1.72
CCDC39-204ENST00000476379 IGKV1-13P0DP09 117 aa4.29□□□□□ -1.72
CCDC39-204ENST00000476379 PMS2P11Q13670 270 aa4.29□□□□□ -1.72
CCDC39-204ENST00000476379 GAMTQ14353 236 aa4.29□□□□□ -1.72
CCDC39-204ENST00000476379 KIAA1644Q3SXP7 199 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms