RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 GAPTQ8N292 157 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 DHRSXQ8N5I4 330 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 JAGN1Q8N5M9 183 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 ZNF439Q8NDP4 499 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 RTN4IP1Q8WWV3 396 aaPredicted RBP14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 SPACA1Q9HBV2 294 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 C8orf4Q9NR00 106 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 CHCHD3Q9NX63 227 aaKnown RBP14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 LINC01548A6NM66 108 aa14.82□□□□□ -0.04
CCDC88B-206ENST00000473405 K7EIL1 84 aa14.82□□□□□ -0.04
CCDC88B-206ENST00000473405 SLC31A2O15432 143 aa14.82□□□□□ -0.04
CCDC88B-206ENST00000473405 MPIG6BO95866 241 aa14.82□□□□□ -0.04
CCDC88B-206ENST00000473405 TAS2R43P59537 309 aa14.82□□□□□ -0.04
CCDC88B-206ENST00000473405 RAB12Q6IQ22 244 aa14.82□□□□□ -0.04
CCDC88B-206ENST00000473405 SLC35E3Q7Z769 313 aa14.82□□□□□ -0.04
CCDC88B-206ENST00000473405 TGIF2LXQ8IUE1 241 aa14.82□□□□□ -0.04
CCDC88B-206ENST00000473405 MRPL41Q8IXM3 137 aaKnown RBP14.82□□□□□ -0.04
CCDC88B-206ENST00000473405 FBLIM1Q8WUP2 373 aa14.82□□□□□ -0.04
CCDC88B-206ENST00000473405 MRPS24Q96EL2 167 aaKnown RBP14.82□□□□□ -0.04
CCDC88B-206ENST00000473405 CNOT2Q9NZN8 540 aaKnown RBP14.82□□□□□ -0.04
CCDC88B-206ENST00000473405 EFCAB10A6NFE3 127 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 DUS4LO95620 317 aaKnown RBP14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 MAS1P04201 325 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 THBS3P49746 956 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 ZNF134P52741 427 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 ZNF137PP52743 207 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 EGFEM1PQ0D2K5 195 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 RCN1Q15293 331 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 Q3ZCU0 254 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 SYT6Q5T7P8 510 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 AWAT2Q6E213 333 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 SLC25A48Q6ZT89 311 aaKnown RBP14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 STPG2Q8N412 459 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 STX19Q8N4C7 294 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 Q8N9W7 124 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 RBMXL1Q96E39 390 aaKnown RBP14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 BANF2Q9H503 90 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 PLSCR3Q9NRY6 295 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 ETAA1Q9NY74 926 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 PSORS1C1Q9UIG5 152 aa14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 KMT2CQ8NEZ4 4911 aaKnown RBP14.81□□□□□ -0.04
CCDC88B-206ENST00000473405 ZNF736B4DX44 427 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 MCRIP1C9JLW8 97 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 SC5DO75845 299 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 MGMTP16455 207 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 RCC1P18754 421 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 CAPGP40121 348 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 GPR12P47775 334 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 SIGIRRQ6IA17 410 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 C8orf86Q6ZUL3 223 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 AHSA2Q719I0 299 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 FOXRED2Q8IWF2 684 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 CDH26Q8IXH8 852 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 OR2T10Q8NGZ9 312 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 OR4K15Q8NH41 348 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 Q96M66 194 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 ABCG5Q9H222 651 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 LIN7CQ9NUP9 197 aaKnown RBP14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 TRAPPC2LQ9UL33 140 aa14.8□□□□□ -0.04
CCDC88B-206ENST00000473405 FAM90A10PA6NDY2 464 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 FAM90A7PA6NKC0 464 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 NCBP2LA6PVI3 153 aaKnown RBP14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 FAM90A23PA8MXZ1 464 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 SPINT2O43291 252 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 HBZP02008 142 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 CD1AP06126 327 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 CELP19835 753 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 IL3RAP26951 378 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 CD1BP29016 333 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 HOXD3P31249 432 aaPredicted RBP14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 VHLP40337 213 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 WNT4P56705 351 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 CT45A1Q5HYN5 189 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 C6orf183Q5T699 404 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 C8orf59Q8N0T1 100 aaPredicted RBP14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 PRR18Q8N4B5 295 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 OR51D1Q8NGF3 324 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 OR10V1Q8NGI7 309 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 OR1L1Q8NH94 360 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 CT45A3Q8NHU0 189 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 SELENOIQ9C0D9 397 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 PLCXD1Q9NUJ7 323 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 FKBP14Q9NWM8 211 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 GNG12Q9UBI6 72 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 PEX16Q9Y5Y5 336 aa14.79□□□□□ -0.04
CCDC88B-206ENST00000473405 STAB2Q8WWQ8 2551 aa14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 WI2-2373I1.2A0A1W2PRP0 233 aa14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 MYL12BO14950 172 aa14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 CRTAPO75718 401 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 MOSP00540 346 aa14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 SLC6A1P30531 599 aa14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 SLC35B1P78383 322 aa14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 TMEM30BQ3MIR4 351 aa14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 OGFRL1Q5TC84 451 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 FAM71E2Q8N5Q1 922 aa14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 COMMD1Q8N668 190 aa14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 NKAIN3Q8N8D7 197 aa14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 KLHL30-AS1Q8NEE0 82 aa14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 P2RX4Q99571 388 aa14.78□□□□□ -0.04
CCDC88B-206ENST00000473405 ZFP57Q9NU63 452 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms