RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 TMEM30BQ3MIR4 351 aa12.89□□□□□ -0.35
COL9A3-208ENST00000469802 AWAT2Q6E213 333 aa12.89□□□□□ -0.35
COL9A3-208ENST00000469802 RAB12Q6IQ22 244 aa12.89□□□□□ -0.35
COL9A3-208ENST00000469802 STX19Q8N4C7 294 aa12.89□□□□□ -0.35
COL9A3-208ENST00000469802 NKAIN3Q8N8D7 197 aa12.89□□□□□ -0.35
COL9A3-208ENST00000469802 CHPT1Q8WUD6 406 aa12.89□□□□□ -0.35
COL9A3-208ENST00000469802 SGCDQ92629 289 aa12.89□□□□□ -0.35
COL9A3-208ENST00000469802 THRSPQ92748 146 aa12.89□□□□□ -0.35
COL9A3-208ENST00000469802 Q96M66 194 aa12.89□□□□□ -0.35
COL9A3-208ENST00000469802 IGHV3-43A0A0B4J1X8 118 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 MCRIP1C9JLW8 97 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 PF4P02776 101 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 MAS1P04201 325 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 GAPDHP04406 335 aaKnown RBP12.88□□□□□ -0.35
COL9A3-208ENST00000469802 IGHV3-43DP0DP04 118 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 MGMTP16455 207 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 REG1BP48304 166 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 SLC35A2P78381 396 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 KHDC1LQ5JSQ8 128 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 SIGIRRQ6IA17 410 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 ETV3LQ6ZN32 361 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 SLC25A48Q6ZT89 311 aaKnown RBP12.88□□□□□ -0.35
COL9A3-208ENST00000469802 ZNF329Q86UD4 541 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 NANOGP1Q8N7R0 232 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 MRAPQ8TCY5 172 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 RTN4IP1Q8WWV3 396 aaPredicted RBP12.88□□□□□ -0.35
COL9A3-208ENST00000469802 RCC1LQ96I51 464 aaKnown RBP12.88□□□□□ -0.35
COL9A3-208ENST00000469802 CYYR1Q96J86 154 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 EAF1Q96JC9 268 aaPredicted RBP12.88□□□□□ -0.35
COL9A3-208ENST00000469802 NOL4LQ96MY1 436 aaPredicted RBP12.88□□□□□ -0.35
COL9A3-208ENST00000469802 UQCC2Q9BRT2 126 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 ETAA1Q9NY74 926 aa12.88□□□□□ -0.35
COL9A3-208ENST00000469802 SLC31A2O15432 143 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 CA11O75493 328 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 GLAP06280 429 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 IL3RAP26951 378 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 MAPK3P27361 379 aaPredicted RBP12.87□□□□□ -0.35
COL9A3-208ENST00000469802 RPL23AP62750 156 aaKnown RBP12.87□□□□□ -0.35
COL9A3-208ENST00000469802 HNF4GQ14541 408 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 C6orf183Q5T699 404 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 SYT6Q5T7P8 510 aaPredicted RBP12.87□□□□□ -0.35
COL9A3-208ENST00000469802 RNLSQ5VYX0 342 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 SLC35E3Q7Z769 313 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 MOB3BQ86TA1 216 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 TGIF2LXQ8IUE1 241 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 LINC00482Q8N8I6 264 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 BANF2Q9H503 90 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 RAB9BQ9NP90 201 aa12.87□□□□□ -0.35
COL9A3-208ENST00000469802 IGHV3-72A0A0B4J1Y9 119 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 SERPINE3A8MV23 424 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 SPINT2O43291 252 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 TXNL1O43396 289 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 HBZP02008 142 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 RCC1P18754 421 aaPredicted RBP12.86□□□□□ -0.35
COL9A3-208ENST00000469802 CD1BP29016 333 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 ZNF134P52741 427 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 GP2P55259 537 aaKnown RBP12.86□□□□□ -0.35
COL9A3-208ENST00000469802 TRAT1Q6PIZ9 186 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 STPG2Q8N412 459 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 Q8N9W7 124 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 BPIFB6Q8NFQ5 453 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 OR2T10Q8NGZ9 312 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 OR4K15Q8NH41 348 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 TFAP2CQ92754 450 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 SELENOIQ9C0D9 397 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 MBNL3Q9NUK0 354 aaKnown RBP12.86□□□□□ -0.35
COL9A3-208ENST00000469802 LIN7CQ9NUP9 197 aaKnown RBP12.86□□□□□ -0.35
COL9A3-208ENST00000469802 TRAPPC2LQ9UL33 140 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 PEX16Q9Y5Y5 336 aa12.86□□□□□ -0.35
COL9A3-208ENST00000469802 PDCD6O75340 191 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 CRTAPO75718 401 aaPredicted RBP12.85□□□□□ -0.35
COL9A3-208ENST00000469802 DUS4LO95620 317 aaKnown RBP12.85□□□□□ -0.35
COL9A3-208ENST00000469802 FUT3P21217 361 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 SLC6A1P30531 599 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 VHLP40337 213 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 GPR12P47775 334 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 INSL4Q14641 139 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 CT45A1Q5HYN5 189 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 C6orf141Q5SZD1 244 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 UNQ9370/PRO34162Q6UXP9 181 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 OR2W3Q7Z3T1 314 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 ZNF554Q86TJ5 538 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 FOXRED2Q8IWF2 684 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 COMMD1Q8N668 190 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 OR1L1Q8NH94 360 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 CT45A3Q8NHU0 189 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 ABCG5Q9H222 651 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 PLSCR3Q9NRY6 295 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 GNG12Q9UBI6 72 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 GHRLQ9UBU3 117 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 ERGIC3Q9Y282 383 aa12.85□□□□□ -0.35
COL9A3-208ENST00000469802 LSM2Q9Y333 95 aaKnown RBP12.85□□□□□ -0.35
COL9A3-208ENST00000469802 LINC01548A6NM66 108 aa12.84□□□□□ -0.35
COL9A3-208ENST00000469802 ZNF736B4DX44 427 aaPredicted RBP12.84□□□□□ -0.35
COL9A3-208ENST00000469802 MOSP00540 346 aa12.84□□□□□ -0.35
COL9A3-208ENST00000469802 CDK1P06493 297 aa12.84□□□□□ -0.35
COL9A3-208ENST00000469802 THBS3P49746 956 aa12.84□□□□□ -0.35
COL9A3-208ENST00000469802 GABPB1Q06547 395 aaPredicted RBP12.84□□□□□ -0.35
COL9A3-208ENST00000469802 EGFEM1PQ0D2K5 195 aa12.84□□□□□ -0.35
COL9A3-208ENST00000469802 GPR50Q13585 617 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms