RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 MPV17P39210 176 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 PSG7Q13046 419 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 ALKBH2Q6NS38 261 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 CMTM1Q8IZ96 169 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 SPAG16Q8N0X2 631 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 ZFP82Q8N141 532 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 RARRES2Q99969 163 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 RYDENQ9NUL5 291 aaKnown RBP16.18■□□□□ 0.18
VIM-203ENST00000469543 DOCK11Q5JSL3 2073 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 SEC11BP0C7V7 166 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 PLA2G5P39877 138 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 DVL1P1P54792 670 aaPredicted RBP16.18■□□□□ 0.18
VIM-203ENST00000469543 TBC1D28Q2M2D7 210 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 VWA1Q6PCB0 445 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 C2CD4CQ8TF44 421 aa16.18■□□□□ 0.18
VIM-203ENST00000469543 ROS1P08922 2347 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 OR5B21A6NL26 309 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 F2RP25116 425 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 UCP1P25874 307 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 FOXF2Q12947 444 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 OR1J1Q8NGS3 322 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 IP6K3Q96PC2 410 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 C19orf12Q9NSK7 152 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 NUDT19A8MXV4 375 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 ATP6V0CP27449 155 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 DYNLT3P51808 116 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 GUK1Q16774 197 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 DHRS7BQ6IAN0 325 aaPredicted RBP16.17■□□□□ 0.18
VIM-203ENST00000469543 TRAPPC2LQ9UL33 140 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 BSNQ9UPA5 3926 aa16.17■□□□□ 0.18
VIM-203ENST00000469543 HSPA12AO43301 675 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 WDR1O75083 606 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 VDAC1P21796 283 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 UBE2NP61088 152 aaKnown RBP16.16■□□□□ 0.18
VIM-203ENST00000469543 FAM185AQ8N0U4 392 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 ZNF175Q9Y473 711 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 ANKRD11Q6UB99 2663 aaPredicted RBP16.16■□□□□ 0.18
VIM-203ENST00000469543 H7C2Y5 167 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 WRBO00258 174 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 PSPNO60542 156 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 IGKV1-39P01597 117 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 IGKV1D-39P04432 117 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 PAX9P55771 341 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 TESK1Q15569 626 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 TMEM178AQ8NBL3 297 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 OR10Z1Q8NGY1 313 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 RNF150Q9ULK6 438 aa16.16■□□□□ 0.18
VIM-203ENST00000469543 RBM7Q9Y580 266 aaKnown RBP16.16■□□□□ 0.18
VIM-203ENST00000469543 NXPH2O95156 264 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 UCP2P55851 309 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 ID3Q02535 119 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 H1FOOQ8IZA3 346 aaPredicted RBP16.15■□□□□ 0.18
VIM-203ENST00000469543 OR2G3Q8NGZ4 309 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 RXFP4Q8TDU9 374 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 ISOC2Q96AB3 205 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 GPR146Q96CH1 333 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 LYRM2Q9NU23 88 aaPredicted RBP16.15■□□□□ 0.18
VIM-203ENST00000469543 J3QT63 122 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 ATXN7O15265 892 aaPredicted RBP16.15■□□□□ 0.18
VIM-203ENST00000469543 HLA-DRB3P79483 266 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 TPRX1Q8N7U7 411 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 CLCC1Q96S66 551 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 PARD6AQ9NPB6 346 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 UFSP2Q9NUQ7 469 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 LUZP4Q9P127 313 aa16.15■□□□□ 0.18
VIM-203ENST00000469543 PTPRZ1P23471 2315 aaPredicted RBP16.15■□□□□ 0.18
VIM-203ENST00000469543 CNOT4O95628 575 aaKnown RBP16.14■□□□□ 0.17
VIM-203ENST00000469543 CRYBA1P05813 215 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 OR13C7P0DN81 318 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 VAMP2P63027 116 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 ZNF295-AS1Q8N0V1 137 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 KLF14Q8TD94 323 aaPredicted RBP16.14■□□□□ 0.17
VIM-203ENST00000469543 NANOS1Q8WY41 292 aaKnown RBP16.14■□□□□ 0.17
VIM-203ENST00000469543 GMPPAQ96IJ6 420 aaPredicted RBP16.14■□□□□ 0.17
VIM-203ENST00000469543 PLK3Q9H4B4 646 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 CDH20Q9HBT6 801 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 SPACA1Q9HBV2 294 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 MLXQ9UH92 298 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 RNF115Q9Y4L5 304 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 LINC00205P59089 165 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 RND3P61587 244 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 HNF4GQ14541 408 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 SRSF7Q16629 238 aaKnown RBP eCLIP16.14■□□□□ 0.17
VIM-203ENST00000469543 PLEKHF2Q9H8W4 249 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 MSL2Q9HCI7 577 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 OBP2BQ9NPH6 170 aa16.14■□□□□ 0.17
VIM-203ENST00000469543 EIF3GO75821 320 aaKnown RBP eCLIP16.13■□□□□ 0.17
VIM-203ENST00000469543 SERPINE2P07093 398 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 CEACAM6P40199 344 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 FABP6P51161 128 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 TMEM267Q0VDI3 215 aaPredicted RBP16.13■□□□□ 0.17
VIM-203ENST00000469543 GABRA6Q16445 453 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 FAM214BQ7L5A3 538 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 RTL8AQ9BWD3 113 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 KCNS2Q9ULS6 477 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 SNRNP70P08621 437 aaKnown RBP16.13■□□□□ 0.17
VIM-203ENST00000469543 CTXN2P0C2S0 81 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 H2AFB1P0C5Y9 115 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 SRPXP78539 464 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 PEA15Q15121 130 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 164.4 ms