RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 FAM222BQ8WU58 562 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 SECTM1Q8WVN6 248 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 RBPMSQ93062 196 aaKnown RBP6.41□□□□□ -1.38
COL6A3-208ENST00000468792 LSM10Q969L4 123 aaKnown RBP6.41□□□□□ -1.38
COL6A3-208ENST00000468792 TP53RKQ96S44 253 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 DIRC2Q96SL1 478 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 ZNF471Q9BX82 626 aaPredicted RBP6.41□□□□□ -1.38
COL6A3-208ENST00000468792 C1QTNF6Q9BXI9 259 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 ARV1Q9H2C2 271 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 C11orf1Q9H5F2 150 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 KCNIP1Q9NZI2 227 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 GSKIPQ9P0R6 139 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 IL19Q9UHD0 177 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 PFDN2Q9UHV9 154 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 TRAPPC2LQ9UL33 140 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 UBE2J1Q9Y385 318 aaPredicted RBP6.41□□□□□ -1.38
COL6A3-208ENST00000468792 POMT1Q9Y6A1 747 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 SVILO95425 2214 aa6.41□□□□□ -1.38
COL6A3-208ENST00000468792 MAP1BP46821 2468 aaKnown RBP6.4□□□□□ -1.38
COL6A3-208ENST00000468792 A0A0G2JNJ9 132 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 A0A1B0GU03 582 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 RNF212BA8MTL3 300 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 KRBOX1C9JBD0 128 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 K7EPK0 472 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 M0R1B8 84 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 SIRPB1O00241 398 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 ITGB1BP1O14713 200 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 GPR137BO60478 399 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 PSPNO60542 156 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 GFRA3O60609 400 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 ZNF737O75373 536 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 MBPP02686 304 aaPredicted RBP6.4□□□□□ -1.38
COL6A3-208ENST00000468792 CD55P08174 381 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 FGF2P09038 288 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 GZMHP20718 246 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 CD40P25942 277 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 RPL12P30050 165 aaKnown RBP6.4□□□□□ -1.38
COL6A3-208ENST00000468792 OR3A1P47881 315 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 ZNF83P51522 516 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 ID3Q02535 119 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 ATXN7L3Q14CW9 347 aaPredicted RBP6.4□□□□□ -1.38
COL6A3-208ENST00000468792 IGFBP7Q16270 282 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 AANATQ16613 207 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 SP6Q3SY56 376 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 TMEM268Q5VZI3 342 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 UQCC3Q6UW78 93 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 TMEM108Q6UXF1 575 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 GFRALQ6UXV0 394 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 ZNF695Q8IW36 515 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 BATF2Q8N1L9 274 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 SLC35G3Q8N808 338 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 OR11L1Q8NGX0 322 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 LHFPL5Q8TAF8 219 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 RNF141Q8WVD5 230 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 GALMQ96C23 342 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 SAT2Q96F10 170 aaPredicted RBP6.4□□□□□ -1.38
COL6A3-208ENST00000468792 MEGF10Q96KG7 1140 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 SNX22Q96L94 193 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 CITED4Q96RK1 184 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 VKORC1Q9BQB6 163 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 TAF9BQ9HBM6 251 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 BARX1Q9HBU1 254 aaPredicted RBP6.4□□□□□ -1.38
COL6A3-208ENST00000468792 RAB9BQ9NP90 201 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 CCL28Q9NRJ3 127 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 LIN7CQ9NUP9 197 aaKnown RBP6.4□□□□□ -1.38
COL6A3-208ENST00000468792 SDHAF2Q9NX18 166 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 PRR13Q9NZ81 148 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 Q9UFV3 132 aa6.4□□□□□ -1.38
COL6A3-208ENST00000468792 ERRFI1Q9UJM3 462 aaPredicted RBP6.4□□□□□ -1.38
COL6A3-208ENST00000468792 HEATR1Q9H583 2144 aaKnown RBP6.4□□□□□ -1.39
COL6A3-208ENST00000468792 RAB19A4D1S5 217 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 MSGN1A6NI15 193 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 A6NLC8 198 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 HSPB6O14558 160 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 MGST3O14880 152 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 PITX3O75364 302 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 ZNF205O95201 554 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 IGLV2-14P01704 120 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 PVALBP20472 110 aaPredicted RBP6.39□□□□□ -1.39
COL6A3-208ENST00000468792 TNFSF4P23510 183 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 PRDX2P32119 198 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 FAM27E3Q08E93 113 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 GNMTQ14749 295 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 MSMPQ1L6U9 139 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 TMEM30BQ3MIR4 351 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 TOR2AQ5JU69 321 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 STPG2Q8N412 459 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 CISD2Q8N5K1 135 aaKnown RBP6.39□□□□□ -1.39
COL6A3-208ENST00000468792 OR2Z1Q8NG97 314 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 SNRNP40Q96DI7 357 aaKnown RBP6.39□□□□□ -1.39
COL6A3-208ENST00000468792 DMRTA2Q96SC8 542 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 PLEKHF2Q9H8W4 249 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 MSL2Q9HCI7 577 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 NGBQ9NPG2 151 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 COA4Q9NYJ1 87 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 GAB2Q9UQC2 676 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 SESN1Q9Y6P5 492 aa6.39□□□□□ -1.39
COL6A3-208ENST00000468792 RP1L1Q8IWN7 2480 aaPredicted RBP6.39□□□□□ -1.39
COL6A3-208ENST00000468792 PTPRQQ9UMZ3 2332 aa6.38□□□□□ -1.39
COL6A3-208ENST00000468792 TLN1Q9Y490 2541 aaKnown RBP6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms