RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.2□□□□□ -2.06
VPS13A-209ENST00000467124 PHLDA3Q9Y5J5 127 aa2.2□□□□□ -2.06
VPS13A-209ENST00000467124 DNMT1P26358 1616 aaKnown RBP2.2□□□□□ -2.06
VPS13A-209ENST00000467124 NUP205Q92621 2012 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 IGKV1-12A0A0C4DH73 117 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 TINCRA0A1B0GVN0 87 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 F5H768 121 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 TMEM250H0YL14 139 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 CCRL2O00421 344 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 AZIN1O14977 448 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 PSMG1O95456 288 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 IGKV1D-12P01611 117 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 HLA-AP01891 365 aaKnown RBP2.19□□□□□ -2.06
VPS13A-209ENST00000467124 GUSBP08236 651 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 FBP1P09467 338 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 INAFM2P0DMQ5 153 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 RNASE2P10153 161 aaKnown RBP2.19□□□□□ -2.06
VPS13A-209ENST00000467124 HRES1P13985 223 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 BIKQ13323 160 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 ZNF141Q15928 474 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 DEFB134Q4QY38 66 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 TRMT12Q53H54 448 aaKnown RBP2.19□□□□□ -2.06
VPS13A-209ENST00000467124 PYDC2Q56P42 97 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 MESTQ5EB52 335 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 CDKL4Q5MAI5 379 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 HENMT1Q5T8I9 393 aaKnown RBP2.19□□□□□ -2.06
VPS13A-209ENST00000467124 DRAM2Q6UX65 266 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 VN1R4Q7Z5H5 301 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 NT5DC3Q86UY8 548 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 KRTCAP2Q8N6L1 136 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 STOML3Q8TAV4 291 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 TAMM41Q96BW9 452 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 SMIM12Q96EX1 92 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 IGF2BP2-AS1Q96M15 143 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 ARL6Q9H0F7 186 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 DUSP21Q9H596 190 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 SLC23A2Q9UGH3 650 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 NOSIPQ9Y314 301 aaKnown RBP2.19□□□□□ -2.06
VPS13A-209ENST00000467124 CACNA1DQ01668 2161 aa2.19□□□□□ -2.06
VPS13A-209ENST00000467124 RAD50Q92878 1312 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 A0A1W2PNN7 141 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 M0QYV0 167 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 HPGDSO60760 199 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 SOX14O95416 240 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 PDYNP01213 254 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 CXCL3P19876 107 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 PPP1CCP36873 323 aaKnown RBP2.18□□□□□ -2.06
VPS13A-209ENST00000467124 RPL14P50914 215 aaKnown RBP2.18□□□□□ -2.06
VPS13A-209ENST00000467124 KRTAP10-8P60410 259 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 GTF2BQ00403 316 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 FLI1Q01543 452 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-209ENST00000467124 BSPH1Q075Z2 132 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 PDGFRLQ15198 375 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 FAM151BQ6UXP7 276 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 MTERF4Q7Z6M4 381 aaKnown RBP2.18□□□□□ -2.06
VPS13A-209ENST00000467124 ZBTB8OSQ8IWT0 167 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 EIF4E3Q8N5X7 224 aaKnown RBP2.18□□□□□ -2.06
VPS13A-209ENST00000467124 TMEM251Q8N6I4 163 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 LINC00304Q8N9R0 145 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 TMEM75Q8N9X5 138 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.18□□□□□ -2.06
VPS13A-209ENST00000467124 CMBLQ96DG6 245 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 EBNA1BP2Q99848 306 aaKnown RBP2.18□□□□□ -2.06
VPS13A-209ENST00000467124 B9D2Q9BPU9 175 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 UGT2B28Q9BY64 529 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 MROQ9BYG7 248 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 NKIRAS1Q9NYS0 192 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 COL1A2P08123 1366 aa2.18□□□□□ -2.06
VPS13A-209ENST00000467124 CRB1P82279 1406 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 IGKV1D-37A0A075B6S9 117 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 C15orf65H3BRN8 121 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 BIRC5O15392 142 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 ZW10O43264 779 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 LTAP01374 205 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 IGHV3-53P01767 116 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 COX5BP10606 129 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 CD99P14209 185 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 ZNF708P17019 499 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 CXCL2P19875 107 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 AGTR1P30556 359 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 IFNGR2P38484 337 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 INPP1P49441 399 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 CDK9P50750 372 aaKnown RBP2.17□□□□□ -2.06
VPS13A-209ENST00000467124 EMP2P54851 167 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 PAFAH1B3Q15102 231 aaKnown RBP2.17□□□□□ -2.06
VPS13A-209ENST00000467124 ATP5L2Q7Z4Y8 100 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 LRP11Q86VZ4 500 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 MSRB3Q8IXL7 192 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 TNFAIP8L1Q8WVP5 186 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 SLC25A44Q96H78 314 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-209ENST00000467124 MS4A6AQ9H2W1 248 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 GLS2Q9UI32 602 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 ZNF443Q9Y2A4 671 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-209ENST00000467124 SSH2Q76I76 1423 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 CLUHO75153 1309 aa2.17□□□□□ -2.06
VPS13A-209ENST00000467124 NUP153P49790 1475 aaKnown RBP2.16□□□□□ -2.06
VPS13A-209ENST00000467124 A0A0A6YYH2 397 aa2.16□□□□□ -2.06
VPS13A-209ENST00000467124 GOLGA6L4A6NEF3 574 aa2.16□□□□□ -2.06
VPS13A-209ENST00000467124 A6NJ64 397 aa2.16□□□□□ -2.06
VPS13A-209ENST00000467124 GGTLC3B5MD39 225 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms