RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 VSIRQ9H7M9 311 aa16.91■□□□□ 0.3
SDF4-205ENST00000465727 CCL28Q9NRJ3 127 aa16.91■□□□□ 0.3
SDF4-205ENST00000465727 SPAG17Q6Q759 2223 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 SLC33A1O00400 549 aaPredicted RBP16.9■□□□□ 0.3
SDF4-205ENST00000465727 RAB4AP20338 218 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 HOXA6P31267 233 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 NUBP1P53384 320 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 GPR146Q96CH1 333 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 ANAPC16Q96DE5 110 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 UNC13CQ8NB66 2214 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 H3BP45 60 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 EREGO14944 169 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 TYMSP04818 313 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 CD55P08174 381 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 SCTP09683 121 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 IDH3GP51553 393 aaPredicted RBP16.9■□□□□ 0.3
SDF4-205ENST00000465727 HERPUD1Q15011 391 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 P2RY6Q15077 328 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 TRIM61Q5EBN2 209 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 ACTL10Q5JWF8 245 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 SSX7Q7RTT5 188 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 C17orf78Q8N4C9 275 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 CHCHD2Q9Y6H1 151 aaPredicted RBP16.9■□□□□ 0.3
SDF4-205ENST00000465727 ATP23Q9Y6H3 246 aa16.9■□□□□ 0.3
SDF4-205ENST00000465727 RPL23P62829 140 aaKnown RBP16.89■□□□□ 0.29
SDF4-205ENST00000465727 PAX5Q02548 391 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 WDR74Q6RFH5 385 aaPredicted RBP16.89■□□□□ 0.29
SDF4-205ENST00000465727 CALHM1Q8IU99 346 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 ZIC4Q8N9L1 334 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 ZNF837Q96EG3 531 aaPredicted RBP16.89■□□□□ 0.29
SDF4-205ENST00000465727 IGHV3-15A0A0B4J1V0 119 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 B4E171 279 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 SYNGR2O43760 224 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 SERPINE2P07093 398 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 JMJD7P0C870 316 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 TSPAN7P41732 249 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 ZNF92Q03936 586 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 CISD2Q8N5K1 135 aaKnown RBP16.89■□□□□ 0.29
SDF4-205ENST00000465727 RLN3Q8WXF3 142 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 PIGCQ92535 297 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 LSM10Q969L4 123 aaKnown RBP16.89■□□□□ 0.29
SDF4-205ENST00000465727 UCN2Q96RP3 112 aa16.89■□□□□ 0.29
SDF4-205ENST00000465727 KIAA1549Q9HCM3 1950 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 IGHV1OR15-9A0A0B4J2B8 117 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 A0A0G2JRQ6 117 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 LRP5LA4QPB2 252 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 M0R143 59 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 GLB1P16278 677 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 GZMHP20718 246 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 TUBG1P23258 451 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 SRP14P37108 136 aaKnown RBP16.88■□□□□ 0.29
SDF4-205ENST00000465727 ERVFC1-1P60608 527 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 SAXO1Q8IYX7 474 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 GPHA2Q96T91 129 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 SF3B5Q9BWJ5 86 aaKnown RBP16.88■□□□□ 0.29
SDF4-205ENST00000465727 WDR61Q9GZS3 305 aaKnown RBP16.88■□□□□ 0.29
SDF4-205ENST00000465727 OR51I2Q9H344 312 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 TMEM38BQ9NVV0 291 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 CLEC1BQ9P126 229 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 TIMM9Q9Y5J7 89 aa16.88■□□□□ 0.29
SDF4-205ENST00000465727 GGCTO75223 188 aaKnown RBP16.87■□□□□ 0.29
SDF4-205ENST00000465727 PRSS12P56730 875 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 ERVS71-1P61550 626 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 PRDX4Q13162 271 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 MRPL52Q86TS9 123 aaKnown RBP16.87■□□□□ 0.29
SDF4-205ENST00000465727 LHX4Q969G2 390 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 R3HDM4Q96D70 268 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 RBM14Q96PK6 669 aaKnown RBP16.87■□□□□ 0.29
SDF4-205ENST00000465727 SNHG12Q9BXW3 62 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 DEFB126Q9BYW3 111 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 RIMS4Q9H426 269 aaPredicted RBP16.87■□□□□ 0.29
SDF4-205ENST00000465727 PLK3Q9H4B4 646 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 SLC39A9Q9NUM3 307 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 PSENENQ9NZ42 101 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 C19orf25Q9UFG5 118 aaPredicted RBP16.87■□□□□ 0.29
SDF4-205ENST00000465727 MED12Q93074 2177 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 FGF5P12034 268 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 ZNF32P17041 273 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 PSMB3P49720 205 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 FGF12P61328 243 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 PRAMEF20Q5VT98 475 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 MRPL41Q8IXM3 137 aaKnown RBP16.87■□□□□ 0.29
SDF4-205ENST00000465727 CPT1CQ8TCG5 803 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 BTF3L4Q96K17 158 aa16.87■□□□□ 0.29
SDF4-205ENST00000465727 ASXL3Q9C0F0 2248 aa16.86■□□□□ 0.29
SDF4-205ENST00000465727 RELQ04864 619 aaPredicted RBP16.86■□□□□ 0.29
SDF4-205ENST00000465727 Q6ZS52 159 aa16.86■□□□□ 0.29
SDF4-205ENST00000465727 NECAP1Q8NC96 275 aa16.86■□□□□ 0.29
SDF4-205ENST00000465727 OR2T10Q8NGZ9 312 aa16.86■□□□□ 0.29
SDF4-205ENST00000465727 SPSB4Q96A44 273 aa16.86■□□□□ 0.29
SDF4-205ENST00000465727 PCGF1Q9BSM1 259 aa16.86■□□□□ 0.29
SDF4-205ENST00000465727 REPIN1Q9BWE0 567 aaKnown RBP16.86■□□□□ 0.29
SDF4-205ENST00000465727 OR6C3Q9NZP0 311 aa16.86■□□□□ 0.29
SDF4-205ENST00000465727 DNPH1O43598 174 aa16.85■□□□□ 0.29
SDF4-205ENST00000465727 VENTXO95231 258 aa16.85■□□□□ 0.29
SDF4-205ENST00000465727 DSCR4P56555 118 aaPredicted RBP16.85■□□□□ 0.29
SDF4-205ENST00000465727 PCBD1P61457 104 aa16.85■□□□□ 0.29
SDF4-205ENST00000465727 LCN2P80188 198 aa16.85■□□□□ 0.29
SDF4-205ENST00000465727 C1orf194Q5T5A4 169 aa16.85■□□□□ 0.29
SDF4-205ENST00000465727 RAET1LQ5VY80 246 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms