RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 HIVEP1P15822 2718 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 GABARAPH6UMI1 98 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 LY6G6DO95868 133 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 IGHV1-8P0DP01 117 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 MMP9P14780 707 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 FPR2P25090 351 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 ZNF45Q02386 682 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 TMEM30BQ3MIR4 351 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 PYDC2Q56P42 97 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 PRAMEF5Q5TYX0 476 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 VMO1Q7Z5L0 202 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 LURAP1LQ8IV03 231 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 PRR18Q8N4B5 295 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 BEST4Q8NFU0 473 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 OR52I2Q8NH67 350 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 OR1L1Q8NH94 360 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 UBALD1Q8TB05 177 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 GALMQ96C23 342 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 HEXA-AS1Q9H8Q6 139 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 SESN1Q9Y6P5 492 aa12.94□□□□□ -0.34
USP40-206ENST00000443711 MEIS3P1A6NDR6 274 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 A8MV72 311 aaPredicted RBP12.93□□□□□ -0.34
USP40-206ENST00000443711 F2RL2O00254 374 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 FABP7O15540 132 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 GSTZ1O43708 216 aaPredicted RBP12.93□□□□□ -0.34
USP40-206ENST00000443711 RBBP9O75884 186 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 SCTP09683 121 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 OMGP23515 440 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 NFYBP25208 207 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 DGCR2P98153 550 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 RNASE12Q5GAN4 147 aaKnown RBP12.93□□□□□ -0.34
USP40-206ENST00000443711 CLEC9AQ6UXN8 241 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 GVQW1Q8N7I0 195 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 OR52M1Q8NGK5 317 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 OR4A4PQ8NGN8 299 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 SMIM4Q8WVI0 70 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 S100ZQ8WXG8 99 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 UPRTQ96BW1 309 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 KIRREL1Q96J84 757 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 TBX15Q96SF7 602 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 SMR3AQ99954 134 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 SIRT7Q9NRC8 400 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 ANAPC10Q9UM13 185 aa12.93□□□□□ -0.34
USP40-206ENST00000443711 IGKV1D-8A0A087WSZ0 117 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 SDCBPO00560 298 aaPredicted RBP12.92□□□□□ -0.34
USP40-206ENST00000443711 MMP23AO75900 390 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 GSTT2P0CG29 244 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 GSTT2BP0CG30 244 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 NAT1P18440 290 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 RCVRNP35243 200 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 GDNFP39905 211 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 HTD2P86397 168 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 LTC4SQ16873 150 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 NCR3LG1Q68D85 454 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 ZNF782Q6ZMW2 699 aaPredicted RBP12.92□□□□□ -0.34
USP40-206ENST00000443711 C5orf24Q7Z6I8 188 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 IL1F10Q8WWZ1 152 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 SUCNR1Q9BXA5 334 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 TMEM133Q9H2Q1 129 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 MTFP1Q9UDX5 166 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 ANXA10Q9UJ72 324 aa12.92□□□□□ -0.34
USP40-206ENST00000443711 DIRAS3O95661 229 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 AVPP01185 164 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 FCER2P06734 321 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 CTXN2P0C2S0 81 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 ARPC4P59998 168 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 ACTBP60709 375 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 ACTG1P63261 375 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 SSBP1Q04837 148 aaKnown RBP12.91□□□□□ -0.34
USP40-206ENST00000443711 ZNF79Q15937 498 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 CHRFAM7AQ494W8 412 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 STEAP3Q658P3 488 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 TEX29Q8N6K0 151 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 OR13D1Q8NGV5 346 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 TNFRSF14Q92956 283 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 LHX4Q969G2 390 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 AKIP1Q9NQ31 210 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 OR2S2Q9NQN1 319 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 GFOD1Q9NXC2 390 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 GNG12Q9UBI6 72 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 KLK11Q9UBX7 282 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 F8P00451 2351 aa12.91□□□□□ -0.34
USP40-206ENST00000443711 CELSR1Q9NYQ6 3014 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 A0A087X0M5 115 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 A0A1B0GX30 115 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 RGS11O94810 467 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 CD34P28906 385 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 LOXL3P58215 753 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 IGSF11Q5DX21 431 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 C1orf229Q6ZS94 237 aaPredicted RBP12.9□□□□□ -0.34
USP40-206ENST00000443711 Q8N402 240 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 MFSD4AQ8N468 514 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 GDPD1Q8N9F7 314 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 OR5AP2Q8NGF4 316 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 OR52L2PQ8NGH6 319 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 THAP7Q9BT49 309 aaPredicted RBP12.9□□□□□ -0.34
USP40-206ENST00000443711 CABLES2Q9BTV7 478 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 SRRQ9GZT4 340 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 TMEM160Q9NX00 188 aa12.9□□□□□ -0.34
USP40-206ENST00000443711 JPT1Q9UK76 154 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms