RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 CLEC9AQ6UXN8 241 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 C17orf47Q8NEP4 570 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 SNRNP40Q96DI7 357 aaKnown RBP10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 VDAC1P21796 283 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 KIR3DL2P43630 455 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 COL10A1Q03692 680 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 PLAURQ03405 335 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 GAB4Q2WGN9 574 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 NSUN5P2Q63ZY6 315 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 FAM181BA6NEQ2 426 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 TMEM210A6NLX4 147 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 UQCC3Q6UW78 93 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 DHRS11Q6UWP2 260 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 PERPQ96FX8 193 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 NTNG2Q96CW9 530 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 C10orf35Q96D05 121 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 CD1BP29016 333 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 TMEM241Q24JQ0 296 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 SCGB1D4Q6XE38 83 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 SEC11CQ9BY50 192 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 TECRQ9NZ01 308 aaKnown RBP10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 CST4P01036 141 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 CCL8P80075 99 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 TWIST1Q15672 202 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 ZNF66Q6ZN08 573 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 ZNF426Q9BUY5 554 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 PRNDQ9UKY0 176 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 LSM6P62312 80 aaKnown RBP10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 TMEM183BQ1AE95 376 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 CSN3P07498 182 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 MRGPRFQ96AM1 343 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 WDR34Q96EX3 536 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 OR2V2Q96R30 315 aa10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 ZNF552Q9H707 407 aaPredicted RBP10.57□□□□□ -0.72
CCDC88A-207ENST00000436346 SMAD7O15105 426 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 KRTCAP3Q53RY4 240 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 RNFT1Q5M7Z0 435 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 AKIP1Q9NQ31 210 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 ZNF207O43670 478 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 GUCA2BQ16661 112 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 INO80CQ6PI98 192 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 TEX261Q6UWH6 196 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 OR10A7Q8NGE5 316 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 OR4P4Q8NGL7 312 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 EID2BQ96D98 161 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 U3KQ87 197 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 CIDEAO60543 219 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 FAM219AQ8IW50 185 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 GAPTQ8N292 157 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 ZNF714Q96N38 554 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 TMEM140Q9NV12 185 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 M0R2Z0 102 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 FAM106CPP0CH98 169 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 CDC20Q12834 499 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 OPN3Q9H1Y3 402 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 EXOGQ9Y2C4 368 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 TGOLN2O43493 480 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 GUK1Q16774 197 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 PIPOXQ9P0Z9 390 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 HLA-GP17693 338 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 CSF2RBP32927 897 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 RNF212Q495C1 297 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 MESTQ5EB52 335 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 HMGCLL1Q8TB92 370 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 MRM2Q9UI43 246 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 MALRD1Q5VYJ5 2156 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 ETFDHQ16134 617 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 LOXL3P58215 753 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 SLC22A18ASQ8N1D0 253 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 TMEM116Q8NCL8 245 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 OR2D3Q8NGH3 330 aa10.56□□□□□ -0.72
CCDC88A-207ENST00000436346 GALP22466 123 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 LINC00299Q6ZSB3 139 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 A0A1W2PPE3 182 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 SLC6A1P30531 599 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 MTFP1Q9UDX5 166 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 ANXA10Q9UJ72 324 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 PHOX2AO14813 284 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 ZP3P21754 424 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 Q8WTZ3 238 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 TMEM37Q8WXS4 190 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 NPAS1Q99742 590 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 FRRS1LQ9P0K9 344 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 WSB1Q9Y6I7 421 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 C19orf57Q0VDD7 668 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 GBGT1Q8N5D6 347 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 OR2C3Q8N628 320 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 PRR13Q9NZ81 148 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 B4E171 279 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 TSPAN7P41732 249 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 NUBP1P53384 320 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 OR8A1Q8NGG7 326 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 DCTN5Q9BTE1 182 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 MS4A5Q9H3V2 200 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 FXYD1O00168 92 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 NTN1O95631 604 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 CCKARP32238 428 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 ERVFRD-1P60508 538 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 ST3GAL2Q16842 350 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 IZUMO4Q1ZYL8 232 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms