RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TBC1D26Q86UD7 250 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 CCDC36Q8IYA8 594 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 FGFRL1Q8N441 504 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 ZNF565Q8N9K5 539 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 PRR7Q8TB68 274 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 LINC00470Q9BZP3 86 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 NECAP2Q9NVZ3 263 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 TRAPPC2LQ9UL33 140 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 MEMO1Q9Y316 297 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 PUS1Q9Y606 427 aaKnown RBP eCLIP7.12□□□□□ -1.27
CD44-208ENST00000428726 CHD3Q12873 2000 aaKnown RBP7.12□□□□□ -1.27
CD44-208ENST00000428726 A0A0G2JRQ6 117 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 A0A1W2PPH5 198 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 LINC00587B1AMM8 73 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 RNASEK-C17orf49H0YIS7 233 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 RBMXL2O75526 392 aaKnown RBP7.12□□□□□ -1.27
CD44-208ENST00000428726 NQO2P16083 231 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 DTYMKP23919 212 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 TMEM267Q0VDI3 215 aaPredicted RBP7.12□□□□□ -1.27
CD44-208ENST00000428726 OR8B8Q15620 311 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 MST1LQ2TV78 715 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 LOXL4Q96JB6 756 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 C2orf50Q96LR7 162 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 CDH20Q9HBT6 801 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 ZNF286AQ9HBT8 521 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 WFDC1Q9HC57 220 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 NIT2Q9NQR4 276 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 DCAF16Q9NXF7 216 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 IL36GQ9NZH8 169 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 ATPIF1Q9UII2 106 aa7.12□□□□□ -1.27
CD44-208ENST00000428726 KLF13Q9Y2Y9 288 aaPredicted RBP7.12□□□□□ -1.27
CD44-208ENST00000428726 A0A1W2PPE2 198 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 DEGS1O15121 323 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 FAM157CP0CG43 387 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 PET100P0DJ07 73 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 GLP1RP43220 463 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 GABRA2P47869 451 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 ZNF816Q0VGE8 651 aaPredicted RBP7.11□□□□□ -1.27
CD44-208ENST00000428726 PSG7Q13046 419 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 MIDNQ504T8 468 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 FBXW9Q5XUX1 488 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 PRSS54Q6PEW0 395 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 BEND4Q6ZU67 534 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 PLPPR1Q8TBJ4 325 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 MRGPRDQ8TDS7 321 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 NRIP2Q9BQI9 281 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 PRDM14Q9GZV8 571 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 SPACA1Q9HBV2 294 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 MMP24Q9Y5R2 645 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 ZNF727A8MUV8 499 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 IFNA21P01568 189 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 CTSDP07339 412 aaPredicted RBP7.11□□□□□ -1.27
CD44-208ENST00000428726 LYL1P12980 280 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 DLX1P56177 255 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 FLI1Q01543 452 aaPredicted RBP7.11□□□□□ -1.27
CD44-208ENST00000428726 ZNF154Q13106 437 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 GNMTQ14749 295 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 DUX4L9Q6RFH8 374 aaPredicted RBP7.11□□□□□ -1.27
CD44-208ENST00000428726 TMEM182Q6ZP80 229 aaPredicted RBP7.11□□□□□ -1.27
CD44-208ENST00000428726 ZNF695Q8IW36 515 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 MDS2Q8NDY4 140 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 SFT2D1Q8WV19 159 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 SPSB4Q96A44 273 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 SNRNP40Q96DI7 357 aaKnown RBP7.11□□□□□ -1.27
CD44-208ENST00000428726 C1QTNF5Q9BXJ0 243 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 DECR2Q9NUI1 292 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 C1orf123Q9NWV4 160 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 ZNRD1Q9P1U0 126 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 LPAR3Q9UBY5 353 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 KCNIP3Q9Y2W7 256 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 POLQO75417 2590 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 TRAV24A0A0B4J272 114 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 SPRY3O43610 288 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 PSPNO60542 156 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 HKR1P10072 659 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 PSG2P11465 335 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 ZNF14P17017 642 aaPredicted RBP7.11□□□□□ -1.27
CD44-208ENST00000428726 PPP1CBP62140 327 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 NAAAQ02083 359 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 SMCO1Q147U7 214 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 SCCPDHQ8NBX0 429 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 OR52L2PQ8NGH6 319 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 APOBEC3DQ96AK3 386 aaPredicted RBP7.11□□□□□ -1.27
CD44-208ENST00000428726 ABHD14BQ96IU4 210 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 RARRES2Q99969 163 aa7.11□□□□□ -1.27
CD44-208ENST00000428726 TANC2Q9HCD6 1990 aa7.1□□□□□ -1.27
CD44-208ENST00000428726 ANKHD1Q8IWZ3 2542 aaKnown RBP7.1□□□□□ -1.27
CD44-208ENST00000428726 RPL36A-HNRNPH2H7BZ11 118 aa7.1□□□□□ -1.27
CD44-208ENST00000428726 M0R1B8 84 aa7.1□□□□□ -1.27
CD44-208ENST00000428726 TIMM8AO60220 97 aaPredicted RBP7.1□□□□□ -1.27
CD44-208ENST00000428726 PRB4P10163 310 aaPredicted RBP7.1□□□□□ -1.27
CD44-208ENST00000428726 MDKP21741 143 aaPredicted RBP7.1□□□□□ -1.27
CD44-208ENST00000428726 SSTR5P35346 364 aa7.1□□□□□ -1.27
CD44-208ENST00000428726 FAM27E3Q08E93 113 aa7.1□□□□□ -1.27
CD44-208ENST00000428726 PJVKQ0ZLH3 352 aa7.1□□□□□ -1.27
CD44-208ENST00000428726 PRR30Q53SZ7 412 aaPredicted RBP7.1□□□□□ -1.27
CD44-208ENST00000428726 AVPI1Q5T686 147 aa7.1□□□□□ -1.27
CD44-208ENST00000428726 VKORC1L1Q8N0U8 176 aa7.1□□□□□ -1.27
CD44-208ENST00000428726 FAM58AQ8N1B3 248 aa7.1□□□□□ -1.27
CD44-208ENST00000428726 POC1AQ8NBT0 407 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms