RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 SPRY3O43610 288 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 GLAP06280 429 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 DUX4L2P0CJ85 424 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 DUX4L3P0CJ86 424 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 DUX4L4P0CJ87 422 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 DUX4L5P0CJ88 424 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 DUX4L6P0CJ89 424 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 DUX4L7P0CJ90 424 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 NKX2-1P43699 371 aaPredicted RBP10.09□□□□□ -0.79
PTPRN-204ENST00000423636 GLIPR1P48060 266 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 CCL20P78556 96 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 PRB3Q04118 309 aaPredicted RBP10.09□□□□□ -0.79
PTPRN-204ENST00000423636 GABRA6Q16445 453 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 TMEM211Q6ICI0 200 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 DUX4L9Q6RFH8 374 aaPredicted RBP10.09□□□□□ -0.79
PTPRN-204ENST00000423636 PCSK4Q6UW60 755 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 ZNF573Q86YE8 665 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 FGFRL1Q8N441 504 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 DMBX1Q8NFW5 382 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 TMEM171Q8WVE6 324 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 LOXL4Q96JB6 756 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 RARRES2Q99969 163 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 NKX6-2Q9C056 277 aaPredicted RBP10.09□□□□□ -0.79
PTPRN-204ENST00000423636 DUX4Q9UBX2 424 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 LPAR3Q9UBY5 353 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 TRDCB7Z8K6 153 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 KRBOX1C9JBD0 128 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 ST8SIA3O43173 380 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 RAMP3O60896 148 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 RBMXL2O75526 392 aaKnown RBP10.09□□□□□ -0.79
PTPRN-204ENST00000423636 PGLYRP1O75594 196 aaPredicted RBP10.09□□□□□ -0.79
PTPRN-204ENST00000423636 Q6ZSR3 168 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 BEND4Q6ZU67 534 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 HSD17B13Q7Z5P4 300 aaPredicted RBP10.09□□□□□ -0.79
PTPRN-204ENST00000423636 OR5C1Q8NGR4 320 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 AQP10Q96PS8 301 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 GALR2O43603 387 aaPredicted RBP10.09□□□□□ -0.79
PTPRN-204ENST00000423636 PTBP3O95758 552 aaKnown RBP10.09□□□□□ -0.79
PTPRN-204ENST00000423636 NAPSAO96009 420 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 SERPINE2P07093 398 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 CAMLGP49069 296 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 FAM27E3Q08E93 113 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 ARL6IP1Q15041 203 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 SELENOHQ8IZQ5 122 aaKnown RBP10.09□□□□□ -0.79
PTPRN-204ENST00000423636 ARL11Q969Q4 196 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 GLRX2Q9NS18 164 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 DCAF16Q9NXF7 216 aa10.09□□□□□ -0.79
PTPRN-204ENST00000423636 KMT2EQ8IZD2 1858 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 CENPEQ02224 2701 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 METTL15P1P0C7V9 234 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 PMELP40967 661 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 EIF2S3P41091 472 aaKnown RBP10.08□□□□□ -0.8
PTPRN-204ENST00000423636 TRBV6-7A0A0A0MS04 114 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 RRP8O43159 456 aaKnown RBP10.08□□□□□ -0.8
PTPRN-204ENST00000423636 PET100P0DJ07 73 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 DYNLT3P51808 116 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 VAMP2P63027 116 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 TGFBR3Q03167 851 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 ZNF273Q14593 569 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 HAGHQ16775 308 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 VKORC1L1Q8N0U8 176 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 ZNRF1Q8ND25 227 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 SNRNP40Q96DI7 357 aaKnown RBP10.08□□□□□ -0.8
PTPRN-204ENST00000423636 C18orf12Q96KH6 178 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 TMEM222Q9H0R3 208 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 CACNG5Q9UF02 275 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 CRYBG3Q68DQ2 2970 aa10.08□□□□□ -0.8
PTPRN-204ENST00000423636 OR5H1A6NKK0 313 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 DNASE2O00115 360 aaPredicted RBP10.07□□□□□ -0.8
PTPRN-204ENST00000423636 SFTA3P0C7M3 94 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 EWSR1Q01844 656 aaKnown RBP eCLIP10.07□□□□□ -0.8
PTPRN-204ENST00000423636 OR8G2PQ6IF36 304 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 SLC25A24Q6NUK1 477 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 CD300LFQ8TDQ1 290 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 GMPPAQ96IJ6 420 aaPredicted RBP10.07□□□□□ -0.8
PTPRN-204ENST00000423636 SAV1Q9H4B6 383 aaPredicted RBP10.07□□□□□ -0.8
PTPRN-204ENST00000423636 ATP23Q9Y6H3 246 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 LINC01387J3KSC0 135 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 CST4P01036 141 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 SNRNP70P08621 437 aaKnown RBP10.07□□□□□ -0.8
PTPRN-204ENST00000423636 EDDM3BP56851 147 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 TCF15Q12870 199 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 SHEQ5VZ18 495 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 SEM1Q6ZVN7 128 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 NANOS1Q8WY41 292 aaKnown RBP10.07□□□□□ -0.8
PTPRN-204ENST00000423636 ZNRD1Q9P1U0 126 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 ST8SIA5O15466 376 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 ATG12O94817 140 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 TSPAN15O95858 294 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 CD55P08174 381 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 FGF8P55075 233 aaPredicted RBP10.07□□□□□ -0.8
PTPRN-204ENST00000423636 PIP4P1Q86T03 277 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 CCDC36Q8IYA8 594 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 WDR31Q8NA23 367 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 RSG1Q9BU20 258 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 RSRP1Q9BUV0 290 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 RTL8AQ9BWD3 113 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 UQCC1Q9NVA1 299 aa10.07□□□□□ -0.8
PTPRN-204ENST00000423636 RCC2Q9P258 522 aaKnown RBP10.07□□□□□ -0.8
PTPRN-204ENST00000423636 DKK4Q9UBT3 224 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms