RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 OPN4Q9UHM6 478 aa14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 DSCAML1Q8TD84 2053 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 TNFRSF13BO14836 293 aaPredicted RBP14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 GPR37O15354 613 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 HBZP02008 142 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 DNASE1P24855 282 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 NPY4RP50391 375 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 RAB25P57735 213 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 FXYD4P59646 89 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 ZDHHC22Q8N966 263 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 UBALD1Q8TB05 177 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 FAM168AQ92567 244 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 NRGNQ92686 78 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 TOMM40LQ969M1 308 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 GAL3ST2Q9H3Q3 398 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 LINC00312Q9Y6C7 94 aa14.21□□□□□ -0.13
CCDC28B-202ENST00000421922 TRBV23-1A0A0A0MS06 115 aa14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 MEX3AA1L020 520 aaKnown RBP14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 ZNF729A6NN14 1252 aaPredicted RBP14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 NFYAP23511 347 aaPredicted RBP14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 ZBTB25P24278 435 aa14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 SSTR5P35346 364 aa14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 GNB2P62879 340 aa14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 TMED4Q7Z7H5 227 aa14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 OR1L1Q8NH94 360 aa14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 MARVELD1Q9BSK0 173 aa14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 DCTN5Q9BTE1 182 aa14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 PATZ1Q9HBE1 687 aaKnown RBP14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 CALYQ9NYX4 217 aa14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 C14orf166Q9Y224 244 aaKnown RBP14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 UBE2J1Q9Y385 318 aaPredicted RBP14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 RBM7Q9Y580 266 aaKnown RBP14.2□□□□□ -0.14
CCDC28B-202ENST00000421922 TRBV6-7A0A0A0MS04 114 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 A0A1W2PPH5 198 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 NDUFS8O00217 210 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 PEX14O75381 377 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 ZNF728P0DKX0 622 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 FPR2P25090 351 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 RAG2P55895 527 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 DSCR9P59020 149 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 HERPUD1Q15011 391 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 LTC4SQ16873 150 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 ESCO2Q56NI9 601 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 DHRS11Q6UWP2 260 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 FGFRL1Q8N441 504 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 OR13C8Q8NGS7 320 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 MARCH1Q8TCQ1 289 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 GIMAP1Q8WWP7 306 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 TMPRSS13Q9BYE2 586 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 GSX2Q9BZM3 304 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 GNG12Q9UBI6 72 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 FLVCR2Q9UPI3 526 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 DOCK11Q5JSL3 2073 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 CENPEQ02224 2701 aa14.19□□□□□ -0.14
CCDC28B-202ENST00000421922 ANKRD17O75179 2603 aaKnown RBP14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 NPIPB11E5RHQ5 1161 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 PPYP01298 95 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 AADACP22760 399 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 TAS2R31P59538 309 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 SURF2Q15527 256 aaPredicted RBP14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 TMEM30BQ3MIR4 351 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 LHFPL1Q86WI0 220 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 RFESDQ8TAC1 157 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 ZFAND1Q8TCF1 268 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 RAB39BQ96DA2 213 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 BPESC1Q9GZL8 116 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 OR2S2Q9NQN1 319 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 C19orf12Q9NSK7 152 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 BEX4Q9NWD9 120 aaPredicted RBP14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 TAS2R3Q9NYW6 316 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 ARID1AO14497 2285 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 DCHS2Q6V1P9 2916 aa14.18□□□□□ -0.14
CCDC28B-202ENST00000421922 IGKV1-6A0A0C4DH72 117 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 KBTBD11-OT1A0A1B0GTJ5 212 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 OR5H14A6NHG9 310 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 PRAF2O60831 178 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 RGS11O94810 467 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 HEXAP06865 529 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 WNT2P09544 360 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 PAX1P15863 534 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 CEACAM6P40199 344 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 HTD2P86397 168 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 ABCA11PQ4W5N1 156 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 WDR25Q64LD2 544 aaPredicted RBP14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 LPCAT3Q6P1A2 487 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 C5orf24Q7Z6I8 188 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 CORO2AQ92828 525 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 MOB3AQ96BX8 217 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 ZNF714Q96N38 554 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 SSBP3Q9BWW4 388 aaPredicted RBP14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 BEX2Q9BXY8 128 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 BEX1Q9HBH7 125 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 GPN1Q9HCN4 374 aaPredicted RBP14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 OR1A1Q9P1Q5 309 aa14.17□□□□□ -0.14
CCDC28B-202ENST00000421922 SPG11Q96JI7 2443 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 A0A1B0GVG6 124 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 C15orf65H3BRN8 121 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 S100GP29377 79 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 BAMBIQ13145 260 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 TATDN3Q17R31 274 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 117.4 ms