RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ABCG5Q9H222 651 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 DCLRE1BQ9H816 532 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 ZFP57Q9NU63 452 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 BABAM2Q9NXR7 383 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 TRAPPC2LQ9UL33 140 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 MRPS28Q9Y2Q9 187 aaKnown RBP9.08□□□□□ -0.96
USP4-204ENST00000416417 TRBV5-5A0A0J9YX44 114 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 H0YHG0 523 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 SLC2A2P11168 524 aaPredicted RBP9.07□□□□□ -0.96
USP4-204ENST00000416417 RCC1P18754 421 aaPredicted RBP9.07□□□□□ -0.96
USP4-204ENST00000416417 MYF6P23409 242 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 RPS11P62280 158 aaKnown RBP eCLIP9.07□□□□□ -0.96
USP4-204ENST00000416417 ADARB1P78563 741 aaKnown RBP9.07□□□□□ -0.96
USP4-204ENST00000416417 GPR50Q13585 617 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 DOC2BQ14184 412 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 GNMTQ14749 295 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 PNLIPRP3Q17RR3 467 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 LRRC36Q1X8D7 754 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 CCDC58Q4VC31 144 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 CT45A1Q5HYN5 189 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 GLIPR1L1Q6UWM5 242 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 IZUMO1Q8IYV9 350 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 JAGN1Q8N5M9 183 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 LINC00311Q8N616 119 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 ZNF439Q8NDP4 499 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 ZNF555Q8NEP9 628 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 CT45A3Q8NHU0 189 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 SMIM19Q96E16 107 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 S1PR3Q99500 378 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 B9D2Q9BPU9 175 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 ETAA1Q9NY74 926 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 GNG12Q9UBI6 72 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 RYR3Q15413 4870 aa9.07□□□□□ -0.96
USP4-204ENST00000416417 UBE2QL1A1L167 161 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 AP4M1O00189 453 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 MOSP00540 346 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 HBZP02008 142 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 MAS1P04201 325 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 GTF2F2P13984 249 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 DCKP27707 260 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 CD1BP29016 333 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 DGCR2P98153 550 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 MPV17LQ2QL34 196 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 DMKNQ6E0U4 476 aaPredicted RBP9.06□□□□□ -0.96
USP4-204ENST00000416417 RAB12Q6IQ22 244 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 TEX38Q6PEX7 206 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 UNQ9370/PRO34162Q6UXP9 181 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 OR52M1Q8NGK5 317 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 CYGBQ8WWM9 190 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 RITA1Q96K30 269 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 OR14A2Q96R54 314 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 RASL11BQ9BPW5 248 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 GPR61Q9BZJ8 451 aa9.06□□□□□ -0.96
USP4-204ENST00000416417 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.06□□□□□ -0.96
USP4-204ENST00000416417 LIN7CQ9NUP9 197 aaKnown RBP9.06□□□□□ -0.96
USP4-204ENST00000416417 MCRIP1C9JLW8 97 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 ORC5O43913 435 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 IL3RAP26951 378 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 CNTFRP26992 372 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 CXorf66Q5JRM2 361 aaPredicted RBP9.05□□□□□ -0.96
USP4-204ENST00000416417 SLC25A48Q6ZT89 311 aaKnown RBP9.05□□□□□ -0.96
USP4-204ENST00000416417 LINC00596Q86U02 117 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 STX19Q8N4C7 294 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 COMMD1Q8N668 190 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 OR52L2PQ8NGH6 319 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 GGHQ92820 318 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 PGLYRP3Q96LB9 341 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 OR5B12Q96R08 314 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 ASCL2Q99929 193 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 MCRIP2Q9BUT9 160 aaKnown RBP9.05□□□□□ -0.96
USP4-204ENST00000416417 SELENOIQ9C0D9 397 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 PAK1IP1Q9NWT1 392 aaPredicted RBP9.05□□□□□ -0.96
USP4-204ENST00000416417 SMPD3Q9NY59 655 aaPredicted RBP9.05□□□□□ -0.96
USP4-204ENST00000416417 DIMT1Q9UNQ2 313 aaKnown RBP9.05□□□□□ -0.96
USP4-204ENST00000416417 EXOSC1Q9Y3B2 195 aaKnown RBP9.05□□□□□ -0.96
USP4-204ENST00000416417 PEX16Q9Y5Y5 336 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 WSB1Q9Y6I7 421 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 TRBV5-7A0A0A0MS05 114 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 SPINT2O43291 252 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 CRTAPO75718 401 aaPredicted RBP9.05□□□□□ -0.96
USP4-204ENST00000416417 MYL12AP19105 171 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 ECI1P42126 302 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 CFHR3Q02985 330 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 FOXE3Q13461 319 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 Q499Y3 187 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 AWAT2Q6E213 333 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 SIGIRRQ6IA17 410 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 FAM71E2Q8N5Q1 922 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 FAM46BQ96A09 425 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 TMEM80Q96HE8 168 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 KCTD7Q96MP8 289 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 KLK15Q9H2R5 256 aa9.05□□□□□ -0.96
USP4-204ENST00000416417 RCC2Q9P258 522 aaKnown RBP9.05□□□□□ -0.96
USP4-204ENST00000416417 G3V318 75 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 ZNF780AO75290 641 aaPredicted RBP9.04□□□□□ -0.96
USP4-204ENST00000416417 MGMTP16455 207 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 VDAC1P21796 283 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 SOX6P35712 828 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 PPP1CCP36873 323 aaKnown RBP9.04□□□□□ -0.96
USP4-204ENST00000416417 CDX1P47902 265 aaPredicted RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms