RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 DMBX1Q8NFW5 382 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 PLPPR1Q8TBJ4 325 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 MRGPRDQ8TDS7 321 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 TMEM171Q8WVE6 324 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 KCNJ16Q9NPI9 418 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 MMP24Q9Y5R2 645 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 WT1P19544 449 aaPredicted RBP11.4□□□□□ -0.58
VPS54-203ENST00000409558 MPV17P39210 176 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 FOXF2Q12947 444 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 FBXW9Q5XUX1 488 aa11.4□□□□□ -0.58
VPS54-203ENST00000409558 OR3A1P47881 315 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 SULT1A2P50226 295 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 PPP1CBP62140 327 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 AWAT1Q58HT5 328 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 TMEM211Q6ICI0 200 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 AIFM2Q9BRQ8 373 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 TMEM222Q9H0R3 208 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 GLRX2Q9NS18 164 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 ARPC4-TTLL3A0A0A6YYG9 625 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 A0A1W2PPH5 198 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 GPR137BO60478 399 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 OR2H2O95918 312 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 ARR3P36575 388 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 TBC1D28Q2M2D7 210 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 SELENOHQ8IZQ5 122 aaKnown RBP11.39□□□□□ -0.59
VPS54-203ENST00000409558 EIF4E3Q8N5X7 224 aaKnown RBP11.39□□□□□ -0.59
VPS54-203ENST00000409558 SCCPDHQ8NBX0 429 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 PURGQ9UJV8 347 aaKnown RBP11.39□□□□□ -0.59
VPS54-203ENST00000409558 TRDCB7Z8K6 153 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 TIMM8AO60220 97 aaPredicted RBP11.39□□□□□ -0.59
VPS54-203ENST00000409558 OR8G1Q15617 311 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 GPR157Q5UAW9 335 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 TMEM252Q8N6L7 170 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 DEFB108BQ8NET1 73 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 PGLYRP1O75594 196 aaPredicted RBP11.39□□□□□ -0.59
VPS54-203ENST00000409558 NAAAQ02083 359 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 ZNF573Q86YE8 665 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 WDYHV1Q96HA8 205 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 ZPBPQ9BS86 351 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 PLEKHA2Q9HB19 425 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 ZNF318Q5VUA4 2279 aa11.39□□□□□ -0.59
VPS54-203ENST00000409558 RRP8O43159 456 aaKnown RBP11.38□□□□□ -0.59
VPS54-203ENST00000409558 FAM201AQ5SY85 155 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 OR52L2PQ8NGH6 319 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 OR1L1Q8NH94 360 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 OR5P3Q8WZ94 311 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 CACNA1BQ00975 2339 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 S100A6P06703 90 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 Q6ZRM9 215 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 C18orf12Q96KH6 178 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 GPR87Q9BY21 358 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 IGHV3OR15-7A0A075B7D8 119 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 TAAR5O14804 337 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 IL2RGP31785 369 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 SNRPEP62304 92 aaKnown RBP11.38□□□□□ -0.59
VPS54-203ENST00000409558 WDR86Q86TI4 376 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 LILRB1Q8NHL6 650 aaPredicted RBP11.38□□□□□ -0.59
VPS54-203ENST00000409558 ABHD14BQ96IU4 210 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 OPN3Q9H1Y3 402 aaPredicted RBP11.38□□□□□ -0.59
VPS54-203ENST00000409558 GNG13Q9P2W3 67 aa11.38□□□□□ -0.59
VPS54-203ENST00000409558 A0A1W2PPE3 182 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 H7C1Q1 480 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 RD3LP0DJH9 198 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 IGHV1-2P23083 117 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 ECI1P42126 302 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 MRPL30Q8TCC3 161 aaKnown RBP11.37□□□□□ -0.59
VPS54-203ENST00000409558 DDA1Q9BW61 102 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 TUBD1Q9UJT1 453 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 TMED3Q9Y3Q3 217 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 KIR2DS1A0A191URI9 304 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 CLDN1O95832 211 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 KIR2DS4P43632 304 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 KIR2DS1Q14954 304 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 AKR1C8PQ5T2L2 129 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 FIP1L1Q6UN15 594 aaKnown RBP11.37□□□□□ -0.59
VPS54-203ENST00000409558 LILRB2Q8N423 598 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 OR5A2Q8NGI9 324 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 GPR146Q96CH1 333 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 TMEM100Q9NV29 134 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 CYC1P08574 325 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 MDKP21741 143 aaPredicted RBP11.37□□□□□ -0.59
VPS54-203ENST00000409558 S100GP29377 79 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 PMELP40967 661 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 PSG7Q13046 419 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 LEAP2Q969E1 77 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 BOD1Q96IK1 185 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 SMIM8Q96KF7 97 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 PLK3Q9H4B4 646 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 METRNQ9UJH8 293 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 COL12A1Q99715 3063 aa11.37□□□□□ -0.59
VPS54-203ENST00000409558 MPV17LQ2QL34 196 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 GTF3AQ92664 365 aaKnown RBP11.36□□□□□ -0.59
VPS54-203ENST00000409558 ZFP57Q9NU63 452 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 ATP23Q9Y6H3 246 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 C7orf77A4D0Y5 90 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 ZNF14P17017 642 aaPredicted RBP11.36□□□□□ -0.59
VPS54-203ENST00000409558 G6PCP35575 357 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 PDZD11Q5EBL8 140 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 UQCC3Q6UW78 93 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 GALNT14Q96FL9 552 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms