RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 FAM90A10PA6NDY2 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A18PA6NE21 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A16PA6NEW6 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A20PA6NIJ5 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A8PA6NJQ4 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A7PA6NKC0 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A22PA8MWA6 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A12PA8MX19 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A5PA8MXJ8 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A23PA8MXZ1 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 HBZP02008 142 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 ADH4P08319 380 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A15PP0C7V4 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A13PP0C7W8 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A14PP0C7W9 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM90A24PP0C7X0 464 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 CHATP28329 748 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 OR2F1Q13607 317 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 PAQR4Q8N4S7 273 aaPredicted RBP7.76□□□□□ -1.17
LIG4-202ENST00000405925 SNX22Q96L94 193 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 NEURL2Q9BR09 285 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 IL36GQ9NZH8 169 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 RALYQ9UKM9 306 aaKnown RBP7.76□□□□□ -1.17
LIG4-202ENST00000405925 YIF1AO95070 293 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 OPN1MWP04001 364 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 OPN1MW2P0DN77 364 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 OPN1MW3P0DN78 364 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 GNLYP22749 145 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 CEACAM3P40198 252 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 ELLP55199 621 aaPredicted RBP7.76□□□□□ -1.17
LIG4-202ENST00000405925 ZNRF1Q8ND25 227 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 TMED6Q8WW62 240 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 PSENENQ9NZ42 101 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 MYO18BQ8IUG5 2567 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 C5orf63A6NC05 138 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 FAM157AC9JC47 383 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 WNT5AP41221 380 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 RPUSD3Q6P087 351 aaKnown RBP7.76□□□□□ -1.17
LIG4-202ENST00000405925 TGIF2LYQ8IUE0 185 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 TGIF2LXQ8IUE1 241 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 OR52L2PQ8NGH6 319 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 SLC35E1Q96K37 410 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 CIB3Q96Q77 187 aaPredicted RBP7.76□□□□□ -1.17
LIG4-202ENST00000405925 SPRY4Q9C004 299 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 HEXA-AS1Q9H8Q6 139 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 PLEKHA2Q9HB19 425 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 RAB18Q9NP72 206 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 HSF4Q9ULV5 492 aa7.76□□□□□ -1.17
LIG4-202ENST00000405925 RCL1Q9Y2P8 373 aaKnown RBP7.76□□□□□ -1.17
LIG4-202ENST00000405925 MUC22E2RYF6 1773 aaPredicted RBP7.75□□□□□ -1.17
LIG4-202ENST00000405925 C17orf112F2Z3M2 114 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 K7EM74 188 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 GLIPR1P48060 266 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 REG1BP48304 166 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 RAB32Q13637 225 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 ADAD2Q8NCV1 583 aaKnown RBP7.75□□□□□ -1.17
LIG4-202ENST00000405925 OR1L1Q8NH94 360 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 RBPMSQ93062 196 aaKnown RBP7.75□□□□□ -1.17
LIG4-202ENST00000405925 MRPL24Q96A35 216 aaKnown RBP7.75□□□□□ -1.17
LIG4-202ENST00000405925 MTCH1Q9NZJ7 389 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 SHANK1Q9Y566 2161 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 TSPAN4O14817 238 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 RPL19P84098 196 aaKnown RBP7.75□□□□□ -1.17
LIG4-202ENST00000405925 VAX1Q5SQQ9 334 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 UBAC2Q8NBM4 344 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 OR4S2Q8NH73 311 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 MRPL37Q9BZE1 423 aaKnown RBP7.75□□□□□ -1.17
LIG4-202ENST00000405925 SLC39A9Q9NUM3 307 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 IL36RNQ9UBH0 155 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 LAMA3Q16787 3333 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 IQCF6A8MYZ5 107 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 MFNGO00587 321 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 IGFBP3P17936 291 aaPredicted RBP7.75□□□□□ -1.17
LIG4-202ENST00000405925 HIST3H3Q16695 136 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 ZNF474Q6S9Z5 364 aaPredicted RBP7.75□□□□□ -1.17
LIG4-202ENST00000405925 SLC7A5P1Q8MH63 180 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 OR2G3Q8NGZ4 309 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 ABHD14BQ96IU4 210 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 ADTRPQ96IZ2 230 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 ZNF714Q96N38 554 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.75□□□□□ -1.17
LIG4-202ENST00000405925 AMMECR1Q9Y4X0 333 aaPredicted RBP7.75□□□□□ -1.17
LIG4-202ENST00000405925 CSPG4Q6UVK1 2322 aa7.75□□□□□ -1.17
LIG4-202ENST00000405925 ZNF106Q9H2Y7 1883 aaKnown RBP7.75□□□□□ -1.17
LIG4-202ENST00000405925 F8W036 122 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 CXCL3P19876 107 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 SPINK9Q5DT21 86 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 FAM209AQ5JX71 171 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 FAHD2BQ6P2I3 314 aaPredicted RBP7.74□□□□□ -1.17
LIG4-202ENST00000405925 SLC25A42Q86VD7 318 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 FAHD2AQ96GK7 314 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 ZNF649Q9BS31 505 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 VSIG4Q9Y279 399 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 DOPEY2Q9Y3R5 2298 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 FREM1Q5H8C1 2179 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 C17orf100A8MU93 164 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 C10orf142B7Z368 130 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 PROB1E7EW31 1015 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 PDGFAP04085 211 aa7.74□□□□□ -1.17
LIG4-202ENST00000405925 S100A6P06703 90 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms