RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 OR3A4PP47883 348 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 SERPINB10P48595 397 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 MXD1Q05195 221 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 GRK1Q15835 563 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 KIAA2026Q5HYC2 2103 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 C9orf152Q5JTZ5 239 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 C1orf100Q5SVJ3 147 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 LYPD6Q86Y78 171 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 Q8IYB0 196 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 PXT1Q8NFP0 134 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 OR6M1Q8NGM8 313 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 METTL9Q9H1A3 318 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 RHOFQ9HBH0 211 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 PCDHB16Q9NRJ7 776 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 NDUFA13Q9P0J0 144 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 MRPS28Q9Y2Q9 187 aaKnown RBP12.72□□□□□ -0.37
CUX2-202ENST00000397643 CEPT1Q9Y6K0 416 aa12.72□□□□□ -0.37
CUX2-202ENST00000397643 SMIM31A0A1B0GVY4 71 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 FAM172BPA6NC97 362 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 NOTOA8MTQ0 251 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 LEUTXA8MZ59 168 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 LY6LH3BQJ8 138 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 M0QZK8 103 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 SLC17A2O00624 439 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 IL1AP01583 271 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 UBBP0CG47 229 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 HTR2CP28335 458 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 SLC6A1P30531 599 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 OR3A1P47881 315 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 P2RX3P56373 397 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 OR10A3P58181 314 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 RSU1Q15404 277 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 RAB11BQ15907 218 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 UTF1Q5T230 341 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 CASC10Q5T4H9 136 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 TPTE2P1Q5T6R2 138 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 AWAT2Q6E213 333 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 ASCL4Q6XD76 172 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 RTN4RL2Q86UN3 420 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 ZNF596Q8TC21 504 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 NOL4LQ96MY1 436 aaPredicted RBP12.71□□□□□ -0.37
CUX2-202ENST00000397643 GFI1Q99684 422 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 ZNF286AQ9HBT8 521 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 GHRLQ9UBU3 117 aa12.71□□□□□ -0.37
CUX2-202ENST00000397643 UBE2J1Q9Y385 318 aaPredicted RBP12.71□□□□□ -0.37
CUX2-202ENST00000397643 IGKV1-12A0A0C4DH73 117 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 BUB1B-PAK6H3BSN5 160 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 SLC22A1O15245 554 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 RAMP3O60896 148 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 ZNF780AO75290 641 aaPredicted RBP12.7□□□□□ -0.38
CUX2-202ENST00000397643 KDM4BO94953 1096 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 IGKV1D-12P01611 117 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 SNRNP70P08621 437 aaKnown RBP12.7□□□□□ -0.38
CUX2-202ENST00000397643 CLEC2LP0C7M8 214 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 BCL3P20749 454 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 GABRR1P24046 479 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 CDK2P24941 298 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 ERP29P30040 261 aaKnown RBP12.7□□□□□ -0.38
CUX2-202ENST00000397643 TGFBR1P36897 503 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 LUMP51884 338 aaPredicted RBP12.7□□□□□ -0.38
CUX2-202ENST00000397643 GPR176Q14439 515 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 HLA-DRB5Q30154 266 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 GLIPR1L1Q6UWM5 242 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 HEPN1Q6WQI6 88 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 CROCCP3Q8IVE0 287 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 KLHL30-AS1Q8NEE0 82 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 OR4D6Q8NGJ1 314 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 EMG1Q92979 244 aaKnown RBP12.7□□□□□ -0.38
CUX2-202ENST00000397643 ISOC1Q96CN7 298 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 DUX3Q96PT4 197 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 PRR25Q96S07 402 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 ASCL2Q99929 193 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 ZMAT5Q9UDW3 170 aaKnown RBP12.7□□□□□ -0.38
CUX2-202ENST00000397643 MOB4Q9Y3A3 225 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 CSMD3Q7Z407 3707 aa12.7□□□□□ -0.38
CUX2-202ENST00000397643 SMIM30A4D0T7 59 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 FAM90A18PA6NE21 464 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 FAM90A16PA6NEW6 464 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 FAM90A20PA6NIJ5 464 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 IFITM5A6NNB3 132 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 FAM90A9PA6NNJ1 464 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 FAM90A12PA8MX19 464 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 FAM90A5PA8MXJ8 464 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 NUDT19A8MXV4 375 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 AIPO00170 330 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 MGST3O14880 152 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 CSTBP04080 98 aaKnown RBP12.69□□□□□ -0.38
CUX2-202ENST00000397643 FAM90A15PP0C7V4 464 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 FAM90A13PP0C7W8 464 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 FAM90A14PP0C7W9 464 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 FAM90A24PP0C7X0 464 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 DUSP1P28562 367 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 RPS19P39019 145 aaKnown RBP12.69□□□□□ -0.38
CUX2-202ENST00000397643 NPBWR2P48146 333 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 ARHGDIBP52566 201 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 ZNF146Q15072 292 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 HES5Q5TA89 166 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 OR52W1Q6IF63 320 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 SFXN4Q6P4A7 337 aa12.69□□□□□ -0.38
CUX2-202ENST00000397643 TRAPPC6BQ86SZ2 158 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 153.3 ms