RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 KIR2DL2P43627 348 aaPredicted RBP10.39□□□□□ -0.75
SYNPO-202ENST00000394243 RND3P61587 244 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 SLC23A3Q6PIS1 610 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 LRRC29Q8WV35 223 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 R3HDMLQ9H3Y0 253 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 A8MWL6 223 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 MOSPD3O75425 235 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 HLA-DRB1P01911 266 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 EPHA8P29322 1005 aaPredicted RBP10.39□□□□□ -0.75
SYNPO-202ENST00000394243 ZNF124Q15973 351 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 C3orf80F5H4A9 247 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 AMY1AP04745 511 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 SNRPCP09234 159 aaKnown RBP10.39□□□□□ -0.75
SYNPO-202ENST00000394243 H2BFSP57053 126 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 TUBD1Q9UJT1 453 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 ZNF324O75467 553 aaPredicted RBP10.38□□□□□ -0.75
SYNPO-202ENST00000394243 CT62P0C5K7 136 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 TMEM211Q6ICI0 200 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 LINC01465Q8N7H1 131 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 THYN1Q9P016 225 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 A0A1W2PPC4 97 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 MRPS11P82912 194 aaKnown RBP10.38□□□□□ -0.75
SYNPO-202ENST00000394243 SMAD4Q13485 552 aaKnown RBP10.38□□□□□ -0.75
SYNPO-202ENST00000394243 ERASQ7Z444 233 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 TMEM252Q8N6L7 170 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 FAM169BQ8N8A8 192 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 OR13G1Q8NGZ3 307 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 SARAFQ96BY9 339 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 SH3BGRL3Q9H299 93 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 FLRT3Q9NZU0 649 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 ZDHHC8Q9ULC8 765 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 AKAP11Q9UKA4 1901 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 ZNF729A6NN14 1252 aaPredicted RBP10.38□□□□□ -0.75
SYNPO-202ENST00000394243 SMIM13P0DJ93 91 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 GLULP15104 373 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 PPP1CCP36873 323 aaKnown RBP10.38□□□□□ -0.75
SYNPO-202ENST00000394243 HERPUD1Q15011 391 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 SAMD13Q5VXD3 122 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 MBD3L1Q8WWY6 194 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 LSM10Q969L4 123 aaKnown RBP10.38□□□□□ -0.75
SYNPO-202ENST00000394243 C14orf144Q96I85 54 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 FOXQ1Q9C009 403 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 KCNE5Q9UJ90 142 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 MMP17Q9ULZ9 603 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 DNASE2O00115 360 aaPredicted RBP10.38□□□□□ -0.75
SYNPO-202ENST00000394243 PAXXQ9BUH6 204 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 MYOZ1Q9NP98 299 aaPredicted RBP10.38□□□□□ -0.75
SYNPO-202ENST00000394243 ASCL3Q9NQ33 180 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 MRPS18AQ9NVS2 196 aaKnown RBP10.38□□□□□ -0.75
SYNPO-202ENST00000394243 MIA3Q5JRA6 1907 aa10.38□□□□□ -0.75
SYNPO-202ENST00000394243 SLC25A17O43808 307 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 PRRX1P54821 245 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 AMMECR1LQ6DCA0 310 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 ZNF788Q6ZQV5 615 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 TUSC5Q8IXB3 177 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 PRRG2O14669 202 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 TNFRSF1AP19438 455 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 SPANXN1Q5VSR9 72 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 IL36RNQ9UBH0 155 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 OTOFQ9HC10 1997 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 RGPD5Q99666 1765 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 ZNFX1Q9P2E3 1918 aaKnown RBP10.37□□□□□ -0.75
SYNPO-202ENST00000394243 KIAA0100Q14667 2235 aaKnown RBP10.37□□□□□ -0.75
SYNPO-202ENST00000394243 IGLV3-16A0A075B6K0 115 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 NDUFS8O00217 210 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 PTX4Q96A99 478 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 GMPPAQ96IJ6 420 aaPredicted RBP10.37□□□□□ -0.75
SYNPO-202ENST00000394243 TRBV5-3A0A0A0MS03 114 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 NANOS3P60323 173 aaKnown RBP10.37□□□□□ -0.75
SYNPO-202ENST00000394243 HOXA4Q00056 320 aaPredicted RBP10.37□□□□□ -0.75
SYNPO-202ENST00000394243 FXYD3Q14802 87 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 C1QL3Q5VWW1 255 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 LINC01555Q8NAE3 123 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 RASL11BQ9BPW5 248 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 PXMP4Q9Y6I8 212 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 TRAV39A0A0B4J263 110 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 hADV38S2A0JD32 116 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 HOXB3P14651 431 aaPredicted RBP10.37□□□□□ -0.75
SYNPO-202ENST00000394243 CKS2P33552 79 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 GRAMD2BQ96HH9 432 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 PGLYRP3Q96LB9 341 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 P2RX4Q99571 388 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 TMEM208Q9BTX3 173 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 WNT10AQ9GZT5 417 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 CKAP5Q14008 2032 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 DPRXA6NFQ7 191 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 CTSVO60911 334 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 HTN1P15515 57 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 METAP1P53582 386 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 RBPMS2Q6ZRY4 209 aaKnown RBP10.37□□□□□ -0.75
SYNPO-202ENST00000394243 WDR34Q96EX3 536 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 PGLYRP4Q96LB8 373 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 SIT1Q9Y3P8 196 aa10.37□□□□□ -0.75
SYNPO-202ENST00000394243 A0A1W2PRD5 423 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 A0A1W2PRF3 423 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 A0A1W2PRM7 423 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 GNG7O60262 68 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 APELAP0DMC3 54 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 Q6ZNB5 142 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 PQLC2Q6ZP29 291 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms