RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ATXN7L3Q14CW9 347 aaPredicted RBP8.55□□□□□ -1.04
VPS53-202ENST00000389040 CLEC12BQ2HXU8 276 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 MPV17LQ2QL34 196 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 Q5PR19 223 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 HAGHLQ6PII5 290 aaPredicted RBP8.55□□□□□ -1.04
VPS53-202ENST00000389040 ACOT7LQ6ZUV0 252 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 ZNF573Q86YE8 665 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 C1orf87Q8N0U7 546 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 ZCCHC24Q8N2G6 241 aaKnown RBP8.55□□□□□ -1.04
VPS53-202ENST00000389040 SCARB1Q8WTV0 552 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 FAM168AQ92567 244 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 MEGF10Q96KG7 1140 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 OR2V2Q96R30 315 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 RTL8AQ9BWD3 113 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 RCC2Q9P258 522 aaKnown RBP8.55□□□□□ -1.04
VPS53-202ENST00000389040 MBD2Q9UBB5 411 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 PPP1R3CQ9UQK1 317 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 DSCAMO60469 2012 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 CSMD2Q7Z408 3487 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 CACNA1DQ01668 2161 aa8.55□□□□□ -1.04
VPS53-202ENST00000389040 KANTRA0A1W2PQU2 76 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 RNF222A6NCQ9 220 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 CRYM-AS1A6NIL9 109 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 SYNGR1O43759 233 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 ZNF728P0DKX0 622 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 FCGR2CP31995 323 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 GNG3P63215 75 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 ALKAL2Q6UX46 152 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 Q6ZPA2 131 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 LINC00596Q86U02 117 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 COMMD7Q86VX2 200 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 SGPP2Q8IWX5 399 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 INO80EQ8NBZ0 244 aaPredicted RBP8.54□□□□□ -1.04
VPS53-202ENST00000389040 TIMD4Q96H15 378 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 PIMREGQ9BSJ6 248 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 METTL8Q9H825 291 aaKnown RBP8.54□□□□□ -1.04
VPS53-202ENST00000389040 GCM1Q9NP62 436 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 C1orf123Q9NWV4 160 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 IL36RNQ9UBH0 155 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 BCL2L11O43521 198 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 SPDEFO95238 335 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 RBMXP38159 391 aaKnown RBP8.54□□□□□ -1.04
VPS53-202ENST00000389040 UBA52P62987 128 aaKnown RBP8.54□□□□□ -1.04
VPS53-202ENST00000389040 IL24Q13007 206 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 Q6ZS49 121 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 OR11L1Q8NGX0 322 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 C10orf105Q8TEF2 133 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 TOMM40LQ969M1 308 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 PKIBQ9C010 78 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 TLNRD1Q9H1K6 362 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 WDR13Q9H1Z4 485 aa8.54□□□□□ -1.04
VPS53-202ENST00000389040 TRBV6-7A0A0A0MS04 114 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 TEX13DA0A0J9YY54 714 aaPredicted RBP8.53□□□□□ -1.04
VPS53-202ENST00000389040 MPTX1A8MV57 137 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 NDUFS7O75251 213 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 ZNF205O95201 554 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 ACAA1P09110 424 aaPredicted RBP8.53□□□□□ -1.04
VPS53-202ENST00000389040 RRASP10301 218 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 IRF2P14316 349 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 PRKACAP17612 351 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 GLP1RP43220 463 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 PIGPP57054 158 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 FXYD4P59646 89 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 SRSF7Q16629 238 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS53-202ENST00000389040 ABCA11PQ4W5N1 156 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 KRTAP1-3Q8IUG1 177 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 ST8SIA2Q92186 375 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 RAB1CQ92928 201 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 MOB3AQ96BX8 217 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 C2orf50Q96LR7 162 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 OR51I2Q9H344 312 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 SPACA1Q9HBV2 294 aa8.53□□□□□ -1.04
VPS53-202ENST00000389040 ANKRD17O75179 2603 aaKnown RBP8.53□□□□□ -1.04
VPS53-202ENST00000389040 LRP5LA4QPB2 252 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 VWC2LB2RUY7 222 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 NAPSAO96009 420 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 RLN2P04090 185 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 NMBP08949 121 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 HOXB5P09067 269 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 FOSL1P15407 271 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 TGIF2LYQ8IUE0 185 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 SLC38A6Q8IZM9 456 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 ZNF525Q8N782 197 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 POC1AQ8NBT0 407 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 ITLN1Q8WWA0 313 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 DCUN1D4Q92564 292 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 CCL17Q92583 94 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 GTF3AQ92664 365 aaKnown RBP8.52□□□□□ -1.04
VPS53-202ENST00000389040 OR10C1Q96KK4 312 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 ZNF488Q96MN9 340 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 NAA60Q9H7X0 242 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 Q9N2K0 584 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 TMEM106BQ9NUM4 274 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 POLQO75417 2590 aa8.52□□□□□ -1.04
VPS53-202ENST00000389040 H0YL77 283 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 J3QT63 122 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 COL8A2P25067 703 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 DUSP1P28562 367 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 UCP3P55916 312 aa8.52□□□□□ -1.05
VPS53-202ENST00000389040 HERV-K104P61576 105 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms