RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 SMIM4Q8WVI0 70 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 ATAD5Q96QE3 1844 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 C9orf170A2RU37 121 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 GZMHP20718 246 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 BSXQ3C1V8 233 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 FAM106AQ4KMX7 169 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 ADAT3Q96EY9 351 aaPredicted RBP8.95□□□□□ -0.98
CLIP1-202ENST00000358808 SPAG17Q6Q759 2223 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 MYO5AQ9Y4I1 1855 aaKnown RBP8.95□□□□□ -0.98
CLIP1-202ENST00000358808 IGLV3-25P01717 112 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 HTN3P15516 51 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 HIKESHIQ53FT3 197 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 FHL5Q5TD97 284 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 TMEM92Q6UXU6 159 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 DPPA3Q6W0C5 159 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 CLRN3Q8NCR9 226 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 TMEM56-RWDD3S4R434 201 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 SPNP16150 400 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 SLC25A1P53007 311 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 TMPRSS3P57727 454 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 FGF20Q9NP95 211 aaPredicted RBP8.94□□□□□ -0.98
CLIP1-202ENST00000358808 TSPAN13O95857 204 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 IER3P46695 156 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 TMEM255AQ5JRV8 349 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 UNQ5815/PRO19632Q6UWF5 114 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 DNAL4O96015 105 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 INHBBP09529 407 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 ZNF25P17030 456 aaPredicted RBP8.94□□□□□ -0.98
CLIP1-202ENST00000358808 MRM1Q6IN84 353 aaKnown RBP8.94□□□□□ -0.98
CLIP1-202ENST00000358808 SH2D5Q6ZV89 423 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 VSTM2LQ96N03 204 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 CCL19Q99731 98 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 SLC17A5Q9NRA2 495 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 SYNGR1O43759 233 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 GABRA6Q16445 453 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 COX19Q49B96 90 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 PRSS54Q6PEW0 395 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 C19orf48Q6RUI8 117 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 MDP1Q86V88 176 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 STPG3Q8N7X2 389 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 POM121Q96HA1 1249 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 PAXXQ9BUH6 204 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 TMEM38BQ9NVV0 291 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 PLXNB2O15031 1838 aa8.94□□□□□ -0.98
CLIP1-202ENST00000358808 TRAV20A0A0B4J274 112 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 A0A0B4J2E0 115 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 A0A1B0GX12 115 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 PSMB11A5LHX3 300 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 ARRDC5A6NEK1 342 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 RBFOX2O43251 390 aaKnown RBP eCLIP8.93□□□□□ -0.983e-7■■■□□ 15.9
CLIP1-202ENST00000358808 ETHE1O95571 254 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 DLX6P56179 175 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 TMEM33P57088 247 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 CDC20Q12834 499 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 ZNF56Q15929 161 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 OR5AU1Q8NGC0 362 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 GEMIN7Q9H840 131 aaKnown RBP8.93□□□□□ -0.98
CLIP1-202ENST00000358808 AKIP1Q9NQ31 210 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 PHLDA3Q9Y5J5 127 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 TCRBV5S2A0A599 114 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 RBFOX3A6NFN3 312 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 NXPH1P58417 271 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 MEGF10Q96KG7 1140 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 ANGPTL4Q9BY76 406 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 NINQ8N4C6 2090 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 PLPP3O14495 311 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 TMEM127O75204 238 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 HYPMO75409 117 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 CXorf1O96002 111 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 SNRPEP62304 92 aaKnown RBP8.93□□□□□ -0.98
CLIP1-202ENST00000358808 RPL31P62899 125 aaKnown RBP8.93□□□□□ -0.98
CLIP1-202ENST00000358808 COL10A1Q03692 680 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 JOSD1Q15040 202 aaPredicted RBP8.93□□□□□ -0.98
CLIP1-202ENST00000358808 TMEM183AQ8IXX5 376 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 ZNF714Q96N38 554 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 METTL1Q9UBP6 276 aaKnown RBP8.93□□□□□ -0.98
CLIP1-202ENST00000358808 COLQQ9Y215 455 aaPredicted RBP8.93□□□□□ -0.98
CLIP1-202ENST00000358808 A0A1B0GTH9 108 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 hCG_38984A0A1B0GV85 526 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 A0A1W2PPC1 479 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 J3QR06 171 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 FXYD1O00168 92 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 MBPP02686 304 aaPredicted RBP8.93□□□□□ -0.98
CLIP1-202ENST00000358808 ATP5J2P56134 94 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 SUMO2P61956 95 aaKnown RBP8.93□□□□□ -0.98
CLIP1-202ENST00000358808 TEX30Q5JUR7 227 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 FAM74A4Q5TZK3 123 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 TMEM101Q96IK0 257 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 MPZL1O95297 269 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 DAOP14920 347 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 COL9A1P20849 921 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 RPL34P49207 117 aaKnown RBP8.93□□□□□ -0.98
CLIP1-202ENST00000358808 ACVR1Q04771 509 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 TEPPQ6URK8 271 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 NFAM1Q8NET5 270 aaPredicted RBP8.93□□□□□ -0.98
CLIP1-202ENST00000358808 MRPL30Q8TCC3 161 aaKnown RBP8.93□□□□□ -0.98
CLIP1-202ENST00000358808 YIPF6Q96EC8 236 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 GPA33Q99795 319 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 PRSS50Q9UI38 385 aa8.93□□□□□ -0.98
CLIP1-202ENST00000358808 IGHV3-72A0A0B4J1Y9 119 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms