RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 OXGR1Q96P68 337 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 MS4A10Q96PG2 267 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 ZNF385AQ96PM9 386 aaKnown RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 PSMG3Q9BT73 122 aaPredicted RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 RIMS4Q9H426 269 aaPredicted RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 PLK3Q9H4B4 646 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 GPR35Q9HC97 309 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 HS3ST3A1Q9Y663 406 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 DUXBA0A1W2PPF3 345 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 ZNF705FA8MVS1 300 aaPredicted RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 SCTP09683 121 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 ZNF705DP0CH99 300 aaPredicted RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 ZNF705BP0CI00 300 aaPredicted RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 IAPPP10997 89 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 MSX1P28360 303 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 TFPI2P48307 235 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 GNG10P50151 68 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 PRDX4Q13162 271 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 SLC25A53Q5H9E4 307 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 Q6ZWC4 215 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 MRPL52Q86TS9 123 aaKnown RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 MRPL30Q8TCC3 161 aaKnown RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 SCGB1C1Q8TD33 95 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 ZCCHC14Q8WYQ9 949 aaKnown RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 LHX4Q969G2 390 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 MRGPRX4Q96LA9 322 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 C20orf144Q9BQM9 153 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 ZNF442Q9H7R0 627 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 UBE2ZQ9H832 354 aaPredicted RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 RALGAPA1Q6GYQ0 2036 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 ARHGAP21Q5T5U3 1957 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 IGKV1-6A0A0C4DH72 117 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 IFNA1P01562 189 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 GYPAP02724 150 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 FBLP22087 321 aaKnown RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 PTGDSP41222 190 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 ZNF41P51814 821 aaPredicted RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 RBM11P57052 281 aaKnown RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 LINC00310P59036 64 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 MALLQ13021 153 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 LRRC75BQ2VPJ9 315 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 TPTE2P1Q5T6R2 138 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 TEX43Q6ZNM6 134 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 OR5D13Q8NGL4 314 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 OR1L3Q8NH93 324 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 IL22RA2Q969J5 263 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 ZNF837Q96EG3 531 aaPredicted RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 BORCS8Q96FH0 119 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 MIEN1Q9BRT3 115 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 OR2J1Q9GZK6 312 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 FBRSQ9HAH7 460 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 IL23AQ9NPF7 189 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 TP53TG3Q9ULZ0 132 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 AQP7P3A6NL99 342 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 C10orf142B7Z368 130 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 H0Y980 276 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 TMEM250H0YL14 139 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 TNFSF13O75888 250 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 TUSC2O75896 110 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 PIAS2O75928 621 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 CNOT4O95628 575 aaKnown RBP5.8□□□□□ -1.48
VPS39-202ENST00000348544 TCN2P20062 427 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 CRYGSP22914 178 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 CHRNA7P36544 502 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 SRP14P37108 136 aaKnown RBP5.8□□□□□ -1.48
VPS39-202ENST00000348544 FASLGP48023 281 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 SERF2P84101 59 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 SHBQ15464 509 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 TESK1Q15569 626 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 BATFQ16520 125 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 CST9LP1Q5W188 147 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 FBXW9Q5XUX1 488 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 TOMM20LQ6UXN7 152 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 WDR5BQ86VZ2 330 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 ZNF296Q8WUU4 475 aaPredicted RBP5.8□□□□□ -1.48
VPS39-202ENST00000348544 RNF138Q8WVD3 245 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 ANAPC16Q96DE5 110 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 OR4C12Q96R67 309 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 PARD6AQ9NPB6 346 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 PLEK2Q9NYT0 353 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 KLRF1Q9NZS2 232 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 RNF150Q9ULK6 438 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 CNTRLQ7Z7A1 2325 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 A0A1W2PR80 420 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 PGLYRP1O75594 196 aaPredicted RBP5.8□□□□□ -1.48
VPS39-202ENST00000348544 OR7C1O76099 320 aaPredicted RBP5.8□□□□□ -1.48
VPS39-202ENST00000348544 UMODP07911 640 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 NPPCP23582 126 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 CDKN1AP38936 164 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 OR5I1Q13606 314 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 CNN3Q15417 329 aaKnown RBP5.8□□□□□ -1.48
VPS39-202ENST00000348544 C10orf128Q5T292 105 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 FAM78BQ5VT40 261 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 TMEM42Q69YG0 159 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 ACSM6Q6P461 480 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 FOXL2NBQ6ZUU3 175 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 LHFPL2Q6ZUX7 228 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 TMEM144Q7Z5S9 345 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.8□□□□□ -1.48
VPS39-202ENST00000348544 OR5T1Q8NG75 326 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms