RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 SFXN3Q9BWM7 321 aa12.72□□□□□ -0.37
TPM3-208ENST00000341485 FAM24AA6NFZ4 105 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 ADAM20O43506 726 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 SMPD2O60906 423 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 DANCRP0C864 163 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 NKX2-1P43699 371 aaPredicted RBP12.71□□□□□ -0.37
TPM3-208ENST00000341485 POLR2GP62487 172 aaKnown RBP eCLIP12.71□□□□□ -0.37
TPM3-208ENST00000341485 HLA-DRB3P79483 266 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 P2RY6Q15077 328 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 BHLHA15Q7RTS1 189 aaPredicted RBP12.71□□□□□ -0.37
TPM3-208ENST00000341485 CBLN2Q8IUK8 224 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 SPIN2AQ99865 258 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 SPIN2BQ9BPZ2 258 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 SH3BGRL3Q9H299 93 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 IFT22Q9H7X7 185 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 CDH20Q9HBT6 801 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 SH3BGRL2Q9UJC5 107 aa12.71□□□□□ -0.37
TPM3-208ENST00000341485 IGSF23A1L1A6 192 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 FAM157AC9JC47 383 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 ATP6V1G2-DDX39BF2Z307 99 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 DEGS1O15121 323 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 TNFSF12O43508 249 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 PGLYRP1O75594 196 aaPredicted RBP12.71□□□□□ -0.38
TPM3-208ENST00000341485 SFTA3P0C7M3 94 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 CEACAM8P31997 349 aaPredicted RBP12.71□□□□□ -0.38
TPM3-208ENST00000341485 ASCL1P50553 236 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 ERVS71-1P61550 626 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 KLRB1Q12918 225 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 NMSQ5H8A3 153 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 CABLES2Q9BTV7 478 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 RTL8AQ9BWD3 113 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 PTPRQQ9UMZ3 2332 aa12.71□□□□□ -0.38
TPM3-208ENST00000341485 SNAPINO95295 136 aa12.7□□□□□ -0.38
TPM3-208ENST00000341485 ZNF44P15621 663 aa12.7□□□□□ -0.38
TPM3-208ENST00000341485 CD80P33681 288 aa12.7□□□□□ -0.38
TPM3-208ENST00000341485 PPP1CBP62140 327 aa12.7□□□□□ -0.38
TPM3-208ENST00000341485 CXorf66Q5JRM2 361 aaPredicted RBP12.7□□□□□ -0.38
TPM3-208ENST00000341485 DHRS7BQ6IAN0 325 aaPredicted RBP12.7□□□□□ -0.38
TPM3-208ENST00000341485 FAM122CQ6P4D5 195 aa12.7□□□□□ -0.38
TPM3-208ENST00000341485 H1FOOQ8IZA3 346 aaPredicted RBP12.7□□□□□ -0.38
TPM3-208ENST00000341485 OR2C3Q8N628 320 aa12.7□□□□□ -0.38
TPM3-208ENST00000341485 PLPPR1Q8TBJ4 325 aa12.7□□□□□ -0.38
TPM3-208ENST00000341485 OR2J1Q9GZK6 312 aa12.7□□□□□ -0.38
TPM3-208ENST00000341485 MAGT1Q9H0U3 335 aa12.7□□□□□ -0.38
TPM3-208ENST00000341485 TINAGQ9UJW2 476 aa12.7□□□□□ -0.38
TPM3-208ENST00000341485 DUXBA0A1W2PPF3 345 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 LRP5LA4QPB2 252 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 CLEC18AA5D8T8 446 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 H0Y980 276 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 AGFG2O95081 481 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 H2AFB1P0C5Y9 115 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 CBR1P16152 277 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 CTRB1P17538 263 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 ALKBH6Q3KRA9 238 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 MIDNQ504T8 468 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 CTRB2Q6GPI1 263 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 CMTM1Q8IZ96 169 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 WDR31Q8NA23 367 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 HSD17B11Q8NBQ5 300 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 SCCPDHQ8NBX0 429 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 CLEC18CQ8NCF0 446 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 OR5D13Q8NGL4 314 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 OR2W1Q9Y3N9 320 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 J3QW42 95 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 SSSCA1O60232 199 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 C1QL1O75973 258 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 FHITP49789 147 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 DVL1P1P54792 670 aaPredicted RBP12.69□□□□□ -0.38
TPM3-208ENST00000341485 ERVK11-1P61568 191 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 FAM76BQ5HYJ3 339 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 OR10J5Q8NHC4 309 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 ABHD14BQ96IU4 210 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 KIRREL1Q96J84 757 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 OBP2BQ9NPH6 170 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 OR1A1Q9P1Q5 309 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 CACFD1Q9UGQ2 172 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 ZNF835Q9Y2P0 537 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 MGAQ8IWI9 3026 aa12.69□□□□□ -0.38
TPM3-208ENST00000341485 CACNA1GO43497 2377 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 TRAV39A0A0B4J263 110 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 TSPAN15O95858 294 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 PVALBP20472 110 aaPredicted RBP12.68□□□□□ -0.38
TPM3-208ENST00000341485 VDAC1P21796 283 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 BMP5P22003 454 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 SNCAP37840 140 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 ODF3L1Q8IXM7 274 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 IL22RA2Q969J5 263 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 ERRFI1Q9UJM3 462 aaPredicted RBP12.68□□□□□ -0.38
TPM3-208ENST00000341485 CEP295Q9C0D2 2601 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 SIRPB1O00241 398 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 OR2H2O95918 312 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 F2RP25116 425 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 CAMLGP49069 296 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 UCP2P55851 309 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 ID3Q02535 119 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 ZNF616Q08AN1 781 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 ZNF474Q6S9Z5 364 aaPredicted RBP12.68□□□□□ -0.38
TPM3-208ENST00000341485 SLC25A40Q8TBP6 338 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 SCRT1Q9BWW7 348 aa12.68□□□□□ -0.38
TPM3-208ENST00000341485 PLEKHF2Q9H8W4 249 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms