RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 A0A1W2PPV9 198 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 ISLRO14498 428 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 ETV6P41212 452 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 MRPS10P82664 201 aaKnown RBP7.15□□□□□ -1.26
HMGB1-203ENST00000341423 LEMD1Q68G75 181 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 WDR73Q6P4I2 378 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 TMEM219Q86XT9 240 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 TMEM54Q969K7 222 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 CHIAQ9BZP6 476 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 EXTL2Q9UBQ6 330 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 A0A0G2JMM0 328 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 A0A1W2PPB8 328 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 A0A1W2PRS3 328 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 KIR3DP1A8MWS1 328 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 SYNGR1O43759 233 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 DUSP14O95147 198 aaKnown RBP7.15□□□□□ -1.26
HMGB1-203ENST00000341423 HTD2P86397 168 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 OR2F1Q13607 317 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 RBMS2Q15434 407 aaKnown RBP7.15□□□□□ -1.26
HMGB1-203ENST00000341423 LGALSLQ3ZCW2 172 aaPredicted RBP7.15□□□□□ -1.26
HMGB1-203ENST00000341423 DLX4Q92988 240 aaPredicted RBP7.15□□□□□ -1.26
HMGB1-203ENST00000341423 TRAF4Q9BUZ4 470 aaPredicted RBP7.15□□□□□ -1.26
HMGB1-203ENST00000341423 RHOFQ9HBH0 211 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 CALYQ9NYX4 217 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 TRAV8-6A0A0B4J262 113 aa7.15□□□□□ -1.27
HMGB1-203ENST00000341423 TRAV41A0A0B4J266 112 aa7.15□□□□□ -1.27
HMGB1-203ENST00000341423 M0R1W7 72 aa7.15□□□□□ -1.27
HMGB1-203ENST00000341423 CRLF1O75462 422 aa7.15□□□□□ -1.27
HMGB1-203ENST00000341423 LY6HO94772 140 aa7.15□□□□□ -1.27
HMGB1-203ENST00000341423 SMIM18P0DKX4 95 aa7.15□□□□□ -1.27
HMGB1-203ENST00000341423 WNT4P56705 351 aa7.15□□□□□ -1.27
HMGB1-203ENST00000341423 NECAP1Q8NC96 275 aa7.15□□□□□ -1.27
HMGB1-203ENST00000341423 OR1L4Q8NGR5 311 aa7.15□□□□□ -1.27
HMGB1-203ENST00000341423 ARHGDIGQ99819 225 aa7.15□□□□□ -1.27
HMGB1-203ENST00000341423 CCDC59Q9P031 241 aaKnown RBP7.15□□□□□ -1.27
HMGB1-203ENST00000341423 A0A0B4J2E0 115 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 A0A1B0GX12 115 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 TNFSF12O43508 249 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 TBX19O60806 448 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 ORM2P19652 201 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 ZNF367Q7RTV3 350 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 LYG2Q86SG7 212 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 YIPF6Q96EC8 236 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 SRXN1Q9BYN0 137 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 IGKV3D-11A0A0A0MRZ8 115 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 PPP6CO00743 305 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 RP2O75695 350 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 IGKV3-11P04433 115 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 TRAPPC2P0DI81 140 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 TRAPPC2BP0DI82 140 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 HLA-DMAP28067 261 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 LOXL1Q08397 574 aaPredicted RBP7.14□□□□□ -1.27
HMGB1-203ENST00000341423 TAF9BQ9HBM6 251 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 MBNL3Q9NUK0 354 aaKnown RBP7.14□□□□□ -1.27
HMGB1-203ENST00000341423 DPRXA6NFQ7 191 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 J3QR06 171 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 MPDU1O75352 247 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 GCAP28676 217 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 GRNP28799 593 aaKnown RBP7.14□□□□□ -1.27
HMGB1-203ENST00000341423 RPS25P62851 125 aaKnown RBP7.14□□□□□ -1.27
HMGB1-203ENST00000341423 SMN1Q16637 294 aaKnown RBP7.14□□□□□ -1.27
HMGB1-203ENST00000341423 COX20Q5RI15 118 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 MRM1Q6IN84 353 aaKnown RBP7.14□□□□□ -1.27
HMGB1-203ENST00000341423 C10orf35Q96D05 121 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 RTN4RQ9BZR6 473 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 USP9XQ93008 2570 aaPredicted RBP7.14□□□□□ -1.27
HMGB1-203ENST00000341423 F5H768 121 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 LINC01619G3V211 115 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 PSMG1O95456 288 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 NQO2P16083 231 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 FBXL7Q9UJT9 491 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 VPREB3Q9UKI3 123 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 IGHV4-30-2A0A087WSY4 118 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 ARPC4-TTLL3A0A0A6YYG9 625 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 TEX48A0A1B0GUV7 120 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 E7EQL1 145 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 TM4SF5O14894 197 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 CD34P28906 385 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 CD200P41217 278 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 SUCLG1P53597 346 aaKnown RBP7.14□□□□□ -1.27
HMGB1-203ENST00000341423 SSX1Q16384 188 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 MPV17LQ2QL34 196 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 OR5B3Q8NH48 314 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 PHYHIPQ92561 330 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 DEPPQ9NTK1 212 aa7.14□□□□□ -1.27
HMGB1-203ENST00000341423 PDCD6O75340 191 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 HTR2AP28223 471 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 HINT1P49773 126 aaPredicted RBP7.13□□□□□ -1.27
HMGB1-203ENST00000341423 TBCEQ15813 527 aaPredicted RBP7.13□□□□□ -1.27
HMGB1-203ENST00000341423 LINC00596Q86U02 117 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 ZNF329Q86UD4 541 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 SPATA25Q9BR10 227 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 C7orf72A4D263 438 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 OR2J3O76001 311 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 PLAUP00749 431 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 RPS27P42677 84 aaKnown RBP7.13□□□□□ -1.27
HMGB1-203ENST00000341423 TMEM187Q14656 261 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 TBPL2Q6SJ96 375 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 C17orf82Q86X59 251 aaPredicted RBP7.13□□□□□ -1.27
HMGB1-203ENST00000341423 KLK11Q9UBX7 282 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 142.8 ms