RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PCGF1Q9BSM1 259 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 SMOC1Q9H4F8 434 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 SRSF10O75494 262 aaKnown RBP10.07□□□□□ -0.8
VPS39-201ENST00000318006 LIMS1P48059 325 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 TMEM50BP56557 158 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 ZNF766Q5HY98 468 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 OR4F17Q8NGA8 305 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 OR6X1Q8NH79 312 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 CCL28Q9NRJ3 127 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 CLEC1BQ9P126 229 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 TUBD1Q9UJT1 453 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 GPR132Q9UNW8 380 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 TMEM265A0A087WTH1 108 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 TRGV10A0A0A0MS01 117 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 A0A1W2PPC1 479 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 ISLRO14498 428 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 SMPD2O60906 423 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 HKR1P10072 659 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 ZNF32P17041 273 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 SPEM2Q0P670 501 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 PSG5Q15238 335 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 GABRA6Q16445 453 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 TMEM211Q6ICI0 200 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 AURKAIP1Q9NWT8 199 aaPredicted RBP10.07□□□□□ -0.8
VPS39-201ENST00000318006 MRPS18BQ9Y676 258 aaKnown RBP10.07□□□□□ -0.8
VPS39-201ENST00000318006 M0R1B8 84 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 DNASE2O00115 360 aaPredicted RBP10.07□□□□□ -0.8
VPS39-201ENST00000318006 FAM157CP0CG43 387 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 OPRK1P41145 380 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 KIR2DS2P43631 304 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 RUNX1Q01196 453 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 VMA21Q3ZAQ7 101 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 OR4P4Q8NGL7 312 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 KISS1RQ969F8 398 aaPredicted RBP10.07□□□□□ -0.8
VPS39-201ENST00000318006 OR6C3Q9NZP0 311 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 EP400Q96L91 3159 aa10.07□□□□□ -0.8
VPS39-201ENST00000318006 CXorf1O96002 111 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 PLP1P60201 277 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 TEX30Q5JUR7 227 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 FNDC7Q5VTL7 733 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 TMEM252Q8N6L7 170 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 TM4SF19Q96DZ7 209 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 ADAT3Q96EY9 351 aaPredicted RBP10.06□□□□□ -0.8
VPS39-201ENST00000318006 SARGQ9BW04 601 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 KCNK7Q9Y2U2 307 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 OR2M5A3KFT3 312 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 ADAM11O75078 769 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 CCL4P13236 92 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 SPATA46Q5T0L3 261 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 CYB5R2Q6BCY4 276 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 P2RX4Q99571 388 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 ATP23Q9Y6H3 246 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 R4GN57 208 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 TRBV5-5A0A0J9YX44 114 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 C5orf52A6NGY3 159 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 LIPT2A6NK58 231 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 FSTP19883 344 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 MEOX1P50221 254 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 MEF2BQ02080 365 aaPredicted RBP10.06□□□□□ -0.8
VPS39-201ENST00000318006 RNF133Q8WVZ7 376 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 OR4C12Q96R67 309 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 SCN3AQ9NY46 2000 aa10.06□□□□□ -0.8
VPS39-201ENST00000318006 OR5B21A6NL26 309 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 KIR3DL2P43630 455 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 RAC3P60763 192 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 PLPPR2Q96GM1 343 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 GPX7Q96SL4 187 aaPredicted RBP10.05□□□□□ -0.8
VPS39-201ENST00000318006 HSD17B10Q99714 261 aaKnown RBP10.05□□□□□ -0.8
VPS39-201ENST00000318006 DTX4Q9Y2E6 619 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 A0A0B4J293 547 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 CENPVL1A0A0U1RR11 272 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 A0A1W2PR80 420 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 RNF224P0DH78 156 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 SMIM17P0DL12 118 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 RIGQ13278 110 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 VASH2Q86V25 355 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 WFDC8Q8IUA0 241 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 RFESDQ8TAC1 157 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 COL25A1Q9BXS0 654 aaPredicted RBP10.05□□□□□ -0.8
VPS39-201ENST00000318006 GCM2O75603 506 aaPredicted RBP10.05□□□□□ -0.8
VPS39-201ENST00000318006 ZNF205O95201 554 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 P01737 135 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 S100A4P26447 101 aaKnown RBP10.05□□□□□ -0.8
VPS39-201ENST00000318006 SPNS3Q6ZMD2 512 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 PDPNQ86YL7 162 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 SLC22A18ASQ8N1D0 253 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 OR2V2Q96R30 315 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 PILRAQ9UKJ1 303 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 TCFL5Q9UL49 500 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 MYO16Q9Y6X6 1858 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 IGHV5-10-1A0A0J9YXX1 117 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 IGSF23A1L1A6 192 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 FBLL1A6NHQ2 334 aaKnown RBP10.05□□□□□ -0.8
VPS39-201ENST00000318006 CD8AP01732 235 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 GLIPR1P48060 266 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 ZP1P60852 638 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 RND3P61587 244 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 LSM6P62312 80 aaKnown RBP10.05□□□□□ -0.8
VPS39-201ENST00000318006 ATRAIDQ6UW56 229 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 RFLNBQ8N5W9 214 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms