RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 VGLL1Q99990 258 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 GGACTQ9BVM4 153 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 RARRES3Q9UL19 164 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 MYH13Q9UKX3 1938 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 TRBV20OR9-2A0A075B6H5 130 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 C3orf80F5H4A9 247 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 SRSF1Q07955 248 aaKnown RBP eCLIP6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 ZNF678Q5SXM1 525 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 CLDN19Q8N6F1 224 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 CHST8Q9H2A9 424 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 WRAP73Q9P2S5 460 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 TBC1D29Q9UFV1 150 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 MYH7P12883 1935 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 MYO5AQ9Y4I1 1855 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 C3P01024 1663 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 PVRP15151 417 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 ZFP36L2P47974 494 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 FUT6P51993 359 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 UTF1Q5T230 341 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 CXorf67Q86X51 503 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 AMER3Q8N944 861 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 PLD4Q96BZ4 506 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 SDHCQ99643 169 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 VAX2Q9UIW0 290 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 IGHV3-43A0A0B4J1X8 118 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 KNCNA6PVL3 124 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 C21orf140B9A014 251 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 KLK10O43240 276 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 IGHV3-43DP0DP04 118 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 SSR4P51571 173 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 TBPL1P62380 186 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 DUX3Q96PT4 197 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 LSM4Q9Y4Z0 139 aaKnown RBP6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 MARCH11A6NNE9 402 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 EEDO75530 441 aaKnown RBP6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 FGF3P11487 239 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 PTGDSP41222 190 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 LHX2P50458 406 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 CX3CL1P78423 397 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 ZNF345Q14585 488 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 CTF1Q16619 201 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 PLK5Q496M5 336 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 ERG28Q9UKR5 140 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 MTCH2Q9Y6C9 303 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 TRAV23DV6A0A075B6W5 121 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 FSTP19883 344 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 IL10RBQ08334 325 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 IL17AQ16552 155 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 PRSS36Q5K4E3 855 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 IRF2BP2Q7Z5L9 587 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 SLC25A42Q86VD7 318 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 WDR76Q9H967 626 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 CACNG4Q9UBN1 327 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 NEUROG3Q9Y4Z2 214 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 KIDINS220Q9ULH0 1771 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 BTG2P78543 158 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 LCNL1Q6ZST4 164 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 OR2L13Q8N349 312 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 PRADC1Q9BSG0 188 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 OCIAD1Q9NX40 245 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 BCL9O00512 1426 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 MYO5BQ9ULV0 1848 aa6.73□□□□□ -1.33
LIMCH1-201ENST00000313860 PPP6CO00743 305 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 IGHG3P01860 377 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 PRR35P0CG20 571 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 MPLP40238 635 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 TNFRSF9Q07011 255 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 SIGLEC14Q08ET2 396 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 PDCD1Q15116 288 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 RIPPLY2Q5TAB7 128 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 SCD5Q86SK9 330 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 LYG1Q8N1E2 194 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 TMEM174Q8WUU8 243 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 ATP6V0BQ99437 205 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 DNAJC15Q9Y5T4 150 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 MYH7BA7E2Y1 1941 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 DIP2AQ14689 1571 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 CPS1P31327 1500 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 NPPBP16860 134 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 CEACAM6P40199 344 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 OPRD1P41143 372 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 ISXQ2M1V0 245 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 FAM209AQ5JX71 171 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 PRRT2Q7Z6L0 340 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 VN1R2Q8NFZ6 395 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 VKORC1Q9BQB6 163 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 SNHG12Q9BXW3 62 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 FGFBP2Q9BYJ0 223 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 IL36GQ9NZH8 169 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 TMEM56-RWDD3S4R434 201 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 NEO1Q92859 1461 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 LOC105371242A0A075B767 164 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 PPIAL4CA0A0B4J2A2 164 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 OR2A4O95047 310 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 PPIAL4GP0DN37 164 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 P2RY1P47900 373 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 TPGS2Q68CL5 300 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 TMEM215Q68D42 235 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 C15orf39Q6ZRI6 1047 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 DTX2Q86UW9 622 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms