RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 TMEM70Q9BUB7 260 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 IL19Q9UHD0 177 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 A0A1B0GU03 582 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 MMP9P14780 707 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 MPLP40238 635 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 OR4B1Q8NGF8 309 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 OR4A5Q8NH83 315 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 TMEM204Q9BSN7 226 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 PARD6GQ9BYG4 376 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-201ENST00000302528 SLC52A3Q9NQ40 469 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 MYO18AQ92614 2054 aaKnown RBP9.13□□□□□ -0.95
CLIP1-201ENST00000302528 FGF9P31371 208 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-201ENST00000302528 ACVR1Q04771 509 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 KLF9Q13886 244 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-201ENST00000302528 SPATA45Q537H7 98 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 TMEM196Q5HYL7 178 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 PHLDA3Q9Y5J5 127 aa9.13□□□□□ -0.95
CLIP1-201ENST00000302528 WNT9BO14905 357 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 NKX2-2O95096 273 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 HOXA6P31267 233 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 REG1BP48304 166 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 DLX6P56179 175 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 CD81P60033 236 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 EWSR1Q01844 656 aaKnown RBP eCLIP9.12□□□□□ -0.95
CLIP1-201ENST00000302528 INSL4Q14641 139 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 LINC00615Q96LM1 132 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-201ENST00000302528 LRRC3BQ96PB8 259 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 HDHD3Q9BSH5 251 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-201ENST00000302528 GPR35Q9HC97 309 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 HSPB7Q9UBY9 170 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 TRAV39A0A0B4J263 110 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 C2CD4DB7Z1M9 353 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 STPG3Q8N7X2 389 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 OR8B12Q8NGG6 310 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 TMEM56-RWDD3S4R434 201 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 ANKRD20A5PA0PJZ0 165 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 HMX2A2RU54 273 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 B4E171 279 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 SCNM1Q9BWG6 230 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 ZBTB42B2RXF5 422 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 IGHV4-34P06331 123 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 GALP22466 123 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 ERVFRD-1P60508 538 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 SUMO2P61956 95 aaKnown RBP9.12□□□□□ -0.95
CLIP1-201ENST00000302528 LAMTOR1Q6IAA8 161 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 TMEM136Q6ZRR5 245 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 OR1K1Q8NGR3 316 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 MS4A4AQ96JQ5 239 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 MAP1LC3AQ9H492 121 aa9.12□□□□□ -0.95
CLIP1-201ENST00000302528 DNAJB12Q9NXW2 375 aaKnown RBP9.12□□□□□ -0.95
CLIP1-201ENST00000302528 PLPP3O14495 311 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 PPYP01298 95 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 SNRPCP09234 159 aaKnown RBP9.11□□□□□ -0.95
CLIP1-201ENST00000302528 FOXB2Q5VYV0 432 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 FAM169BQ8N8A8 192 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 OR52M1Q8NGK5 317 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 SGMS2Q8NHU3 365 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 LSM10Q969L4 123 aaKnown RBP9.11□□□□□ -0.95
CLIP1-201ENST00000302528 VSTM2LQ96N03 204 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 HSPB9Q9BQS6 159 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 IGHV3OR15-7A0A075B7D8 119 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 KLK8O60259 260 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 MPZL1O95297 269 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 GPR6P46095 362 aaPredicted RBP9.11□□□□□ -0.95
CLIP1-201ENST00000302528 UBE2V2Q15819 145 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 NFAM1Q8NET5 270 aaPredicted RBP9.11□□□□□ -0.95
CLIP1-201ENST00000302528 RCC2Q9P258 522 aaKnown RBP9.11□□□□□ -0.95
CLIP1-201ENST00000302528 GLI3P10071 1580 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 MVDP53602 400 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 SPINK14Q6IE38 97 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 RNF133Q8WVZ7 376 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 PRELID3AQ96N28 172 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 LINC00470Q9BZP3 86 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 CXCL16Q9H2A7 254 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 PRDX2P32119 198 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 FAM3BP58499 235 aaPredicted RBP9.11□□□□□ -0.95
CLIP1-201ENST00000302528 TMEM240Q5SV17 173 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 ALG14Q96F25 216 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 GUCD1Q96NT3 240 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 F11RQ9Y624 299 aaKnown RBP9.11□□□□□ -0.95
CLIP1-201ENST00000302528 MYH9P35579 1960 aaKnown RBP9.11□□□□□ -0.95
CLIP1-201ENST00000302528 BRWD1Q9NSI6 2320 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 CRHP06850 196 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 TRIP6Q15654 476 aaKnown RBP9.11□□□□□ -0.95
CLIP1-201ENST00000302528 SH2D5Q6ZV89 423 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 ZBTB34Q8NCN2 500 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 MRPL24Q96A35 216 aaKnown RBP9.11□□□□□ -0.95
CLIP1-201ENST00000302528 WNT16Q9UBV4 365 aa9.11□□□□□ -0.95
CLIP1-201ENST00000302528 PLAUP00749 431 aa9.1□□□□□ -0.95
CLIP1-201ENST00000302528 NAT1P18440 290 aa9.1□□□□□ -0.95
CLIP1-201ENST00000302528 CDKN2AP42771 156 aaKnown RBP9.1□□□□□ -0.95
CLIP1-201ENST00000302528 NUBP1P53384 320 aa9.1□□□□□ -0.95
CLIP1-201ENST00000302528 CTF1Q16619 201 aa9.1□□□□□ -0.95
CLIP1-201ENST00000302528 WNT5BQ9H1J7 359 aa9.1□□□□□ -0.95
CLIP1-201ENST00000302528 SLC25A10Q9UBX3 287 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-201ENST00000302528 AHDC1Q5TGY3 1603 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-201ENST00000302528 NKX2-6A6NCS4 301 aa9.1□□□□□ -0.95
CLIP1-201ENST00000302528 MFAP4P55083 255 aa9.1□□□□□ -0.95
CLIP1-201ENST00000302528 ABHD14BQ96IU4 210 aa9.1□□□□□ -0.95
CLIP1-201ENST00000302528 KLK15Q9H2R5 256 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms