RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 LYPD6BQ8NI32 183 aa16.99■□□□□ 0.31
VPS53-201ENST00000291074 GLRX2Q9NS18 164 aa16.99■□□□□ 0.31
VPS53-201ENST00000291074 TSPAN15O95858 294 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 PGA5P0DJD9 388 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 NFYBP25208 207 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 TMEM182Q6ZP80 229 aaPredicted RBP16.98■□□□□ 0.31
VPS53-201ENST00000291074 ODF3L1Q8IXM7 274 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 SPAG16Q8N0X2 631 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 KLF14Q8TD94 323 aaPredicted RBP16.98■□□□□ 0.31
VPS53-201ENST00000291074 TMEM171Q8WVE6 324 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 SAV1Q9H4B6 383 aaPredicted RBP16.98■□□□□ 0.31
VPS53-201ENST00000291074 OR14J1Q9UGF5 321 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 TRAPPC2LQ9UL33 140 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 POLDIP2Q9Y2S7 368 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 A0A1B0GV50 99 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 FAM157AC9JC47 383 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 PROB1E7EW31 1015 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 J3QW42 95 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 CST7O76096 145 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 PRH1P02810 166 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 RAC2P15153 192 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 B2MP61769 119 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 OR8G1Q15617 311 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 ZNF497Q6ZNH5 498 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 ZNF826PQ6ZT77 177 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 TMEM252Q8N6L7 170 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 OR10V1Q8NGI7 309 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 TAAR3PQ9P1P4 343 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 CACFD1Q9UGQ2 172 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 FZR1Q9UM11 496 aa16.98■□□□□ 0.31
VPS53-201ENST00000291074 IQCF6A8MYZ5 107 aa16.97■□□□□ 0.31
VPS53-201ENST00000291074 IGLV2-14P01704 120 aa16.97■□□□□ 0.31
VPS53-201ENST00000291074 PVALBP20472 110 aaPredicted RBP16.97■□□□□ 0.31
VPS53-201ENST00000291074 VAMP2P63027 116 aa16.97■□□□□ 0.31
VPS53-201ENST00000291074 TESK1Q15569 626 aa16.97■□□□□ 0.31
VPS53-201ENST00000291074 HEATR1Q9H583 2144 aaKnown RBP16.97■□□□□ 0.31
VPS53-201ENST00000291074 LYRM2Q9NU23 88 aaPredicted RBP16.97■□□□□ 0.31
VPS53-201ENST00000291074 PTPRBP23467 1997 aa16.97■□□□□ 0.31
VPS53-201ENST00000291074 SNAPINO95295 136 aa16.97■□□□□ 0.31
VPS53-201ENST00000291074 DEFB109BQ30KR1 87 aa16.97■□□□□ 0.31
VPS53-201ENST00000291074 INO80CQ6PI98 192 aaPredicted RBP16.97■□□□□ 0.31
VPS53-201ENST00000291074 TMEM217Q8N7C4 229 aa16.97■□□□□ 0.31
VPS53-201ENST00000291074 OBP2BQ9NPH6 170 aa16.97■□□□□ 0.31
VPS53-201ENST00000291074 PPP1R3CQ9UQK1 317 aa16.97■□□□□ 0.31
VPS53-201ENST00000291074 CLEC18AA5D8T8 446 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 WNT9BO14905 357 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 MLNRO43193 412 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 HSPA12AO43301 675 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 TFF1P04155 84 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 DVL1P1P54792 670 aaPredicted RBP16.96■□□□□ 0.31
VPS53-201ENST00000291074 ID3Q02535 119 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 WDR31Q8NA23 367 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 CLEC18CQ8NCF0 446 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 AKR1E2Q96JD6 320 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 C19orf12Q9NSK7 152 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 LUZP4Q9P127 313 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 DUXBA0A1W2PPF3 345 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 IGFL2Q6UWQ7 119 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 Q8IYB0 196 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 ESRP2Q9H6T0 727 aaKnown RBP16.96■□□□□ 0.31
VPS53-201ENST00000291074 PLEKHF2Q9H8W4 249 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 CACNA1DQ01668 2161 aa16.96■□□□□ 0.31
VPS53-201ENST00000291074 TRAV17A0A0B4J275 112 aa16.95■□□□□ 0.3
VPS53-201ENST00000291074 CHST1O43916 411 aa16.95■□□□□ 0.3
VPS53-201ENST00000291074 SNCAP37840 140 aa16.95■□□□□ 0.3
VPS53-201ENST00000291074 MDH2P40926 338 aaKnown RBP16.95■□□□□ 0.3
VPS53-201ENST00000291074 PPT1P50897 306 aa16.95■□□□□ 0.3
VPS53-201ENST00000291074 OR5C1Q8NGR4 320 aa16.95■□□□□ 0.3
VPS53-201ENST00000291074 GPR146Q96CH1 333 aa16.95■□□□□ 0.3
VPS53-201ENST00000291074 KCNS2Q9ULS6 477 aa16.95■□□□□ 0.3
VPS53-201ENST00000291074 NBEAQ8NFP9 2946 aa16.95■□□□□ 0.3
VPS53-201ENST00000291074 AQP7O14520 342 aa16.95■□□□□ 0.3
VPS53-201ENST00000291074 SERPINE2P07093 398 aa16.95■□□□□ 0.3
VPS53-201ENST00000291074 ZNF146Q15072 292 aa16.95■□□□□ 0.3
VPS53-201ENST00000291074 RBM7Q9Y580 266 aaKnown RBP16.95■□□□□ 0.3
VPS53-201ENST00000291074 H3BP45 60 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 PSPNO60542 156 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 PITX3O75364 302 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 IGKV1-39P01597 117 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 IGKV1D-39P04432 117 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 ATP6V0CP27449 155 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 HOXC12P31275 282 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 DYNLT3P51808 116 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 FAM213BQ8TBF2 198 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 ABHD14AQ9BUJ0 271 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 IGKV3-15P01624 115 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 CBR1P16152 277 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 COX5AP20674 150 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 S100GP29377 79 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 DHRS7BQ6IAN0 325 aaPredicted RBP16.94■□□□□ 0.3
VPS53-201ENST00000291074 FAM53AQ6NSI3 398 aaPredicted RBP16.94■□□□□ 0.3
VPS53-201ENST00000291074 Q6ZRM9 215 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 IL22RA2Q969J5 263 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 SCRT1Q9BWW7 348 aa16.94■□□□□ 0.3
VPS53-201ENST00000291074 NPIPB11E5RHQ5 1161 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.93■□□□□ 0.3
VPS53-201ENST00000291074 WRBO00258 174 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 SH2D1BO14796 132 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 HAND1O96004 215 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 ZNF16P17020 682 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms