RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PACRGQ96M98 296 aaPredicted RBP10.58□□□□□ -0.72
NUP88-201ENST00000225696 SF3B5Q9BWJ5 86 aaKnown RBP10.58□□□□□ -0.72
NUP88-201ENST00000225696 PRRG4Q9BZD6 226 aa10.58□□□□□ -0.72
NUP88-201ENST00000225696 HIPK2Q9H2X6 1198 aa10.58□□□□□ -0.72
NUP88-201ENST00000225696 SDF2L1Q9HCN8 221 aa10.58□□□□□ -0.72
NUP88-201ENST00000225696 FAM86C1Q9NVL1 165 aa10.58□□□□□ -0.72
NUP88-201ENST00000225696 ASPMQ8IZT6 3477 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 TRAV1-1A0A0B4J248 108 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 H0Y980 276 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 LILRA1O75019 489 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 CBR3O75828 277 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 CLEC12BQ2HXU8 276 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 WIPI1Q5MNZ9 446 aaPredicted RBP10.57□□□□□ -0.72
NUP88-201ENST00000225696 Q6ZS49 121 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 RPS19BP1Q86WX3 136 aaKnown RBP10.57□□□□□ -0.72
NUP88-201ENST00000225696 STX12Q86Y82 276 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 C1orf87Q8N0U7 546 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 OR10D3Q8NH80 312 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 RDH5Q92781 318 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 SPSB4Q96A44 273 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 ABHD14BQ96IU4 210 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 C1QTNF5Q9BXJ0 243 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 UBE2ZQ9H832 354 aaPredicted RBP10.57□□□□□ -0.72
NUP88-201ENST00000225696 CISD1Q9NZ45 108 aaKnown RBP10.57□□□□□ -0.72
NUP88-201ENST00000225696 ERRFI1Q9UJM3 462 aaPredicted RBP10.57□□□□□ -0.72
NUP88-201ENST00000225696 R4GN57 208 aa10.57□□□□□ -0.72
NUP88-201ENST00000225696 CLDN34H7C241 214 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 HMGB3O15347 200 aaKnown RBP10.56□□□□□ -0.72
NUP88-201ENST00000225696 CYB5R3P00387 301 aaPredicted RBP10.56□□□□□ -0.72
NUP88-201ENST00000225696 IGLV2-14P01704 120 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 HBE1P02100 147 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 CCL4P13236 92 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 DDTP30046 118 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 FGF12P61328 243 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 FOXO1Q12778 655 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 CLN3Q13286 438 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 H1FOOQ8IZA3 346 aaPredicted RBP10.56□□□□□ -0.72
NUP88-201ENST00000225696 NECAP1Q8NC96 275 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 OR13D1Q8NGV5 346 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 OR4X1Q8NH49 305 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 GTF3AQ92664 365 aaKnown RBP10.56□□□□□ -0.72
NUP88-201ENST00000225696 PHF7Q9BWX1 381 aaPredicted RBP10.56□□□□□ -0.72
NUP88-201ENST00000225696 PCED1AQ9H1Q7 454 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 RBKSQ9H477 322 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 ZNF552Q9H707 407 aaPredicted RBP10.56□□□□□ -0.72
NUP88-201ENST00000225696 OR1A1Q9P1Q5 309 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 CACNG5Q9UF02 275 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 COLQQ9Y215 455 aaPredicted RBP10.56□□□□□ -0.72
NUP88-201ENST00000225696 ATP23Q9Y6H3 246 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 ELOA3CA0A087WX78 387 aaPredicted RBP10.56□□□□□ -0.72
NUP88-201ENST00000225696 A0A1W2PR80 420 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 CEBPZOSA8MTT3 80 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 NGFP01138 241 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 IGKV1D-33P01593 117 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 IGKV1-33P01594 117 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 NDUFB7P17568 137 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 ELLP55199 621 aaPredicted RBP10.56□□□□□ -0.72
NUP88-201ENST00000225696 RNPS1Q15287 305 aaKnown RBP10.56□□□□□ -0.72
NUP88-201ENST00000225696 PRSS8Q16651 343 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 HLA-BQ31612 363 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 ZNF324BQ6AW86 544 aaPredicted RBP10.56□□□□□ -0.72
NUP88-201ENST00000225696 ZNF525Q8N782 197 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 OR10G4Q8NGN3 311 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 OR2V1Q8NHB1 315 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 M1APQ8TC57 530 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 MRPL30Q8TCC3 161 aaKnown RBP10.56□□□□□ -0.72
NUP88-201ENST00000225696 IL1F10Q8WWZ1 152 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 CABLES2Q9BTV7 478 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 UFSP2Q9NUQ7 469 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 LRFN1Q9P244 771 aa10.56□□□□□ -0.72
NUP88-201ENST00000225696 DSPP15924 2871 aaKnown RBP10.55□□□□□ -0.72
NUP88-201ENST00000225696 URB1O60287 2271 aaKnown RBP10.55□□□□□ -0.72
NUP88-201ENST00000225696 A0A087X0M5 115 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 A0A1B0GX30 115 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 B4DEV8 164 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 TRAPPC6AO75865 159 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 IFNA5P01569 189 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 IGKV1-5P01602 117 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 GZMHP20718 246 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 COLCA1Q6ZS62 124 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 ADGRG7Q96K78 797 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 REPIN1Q9BWE0 567 aaKnown RBP10.55□□□□□ -0.72
NUP88-201ENST00000225696 ZNF391Q9UJN7 358 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 TRAV24A0A0B4J272 114 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 DUXBA0A1W2PPF3 345 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 C5orf49A4QMS7 147 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 PINLYPA6NC86 204 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 GALR2O43603 387 aaPredicted RBP10.55□□□□□ -0.72
NUP88-201ENST00000225696 SERPINE2P07093 398 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 SELLP14151 372 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 MLF1P58340 268 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 COL10A1Q03692 680 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 RTP5Q14D33 572 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 DPPA3Q6W0C5 159 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 SSX9Q7RTT3 188 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 PRR18Q8N4B5 295 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 CDH20Q9HBT6 801 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 DEPPQ9NTK1 212 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 ZFHX4Q86UP3 3567 aa10.55□□□□□ -0.72
NUP88-201ENST00000225696 DOCK11Q5JSL3 2073 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms