RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 PRTFDC1Q9NRG1 225 aa12.69□□□□□ -0.38
PTPRA-201ENST00000216877 ZNF732B4DXR9 585 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 CXCL10P02778 98 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 DEFA4P12838 97 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 DPTQ07507 201 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 RHBDD1Q8TEB9 315 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 DNASE2BQ8WZ79 361 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 CLUHP3Q96NS8 147 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 SH3BGRL2Q9UJC5 107 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 UBE2L5PA0A1B0GUS4 154 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 MDFIC2A0A1B0GVS7 189 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 F2Z2F3 143 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 RER1O15258 196 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 WISP1O95388 367 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 TMEM50AO95807 157 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 MTCP1P56278 107 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 HLA-DQA1Q5Y7H0 255 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 OR8G5Q8NG78 346 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 OR1K1Q8NGR3 316 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 CCL4L1Q8NHW4 92 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 ZC2HC1AQ96GY0 325 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 VSTM2LQ96N03 204 aa12.68□□□□□ -0.38
PTPRA-201ENST00000216877 RNF212BA8MTL3 300 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 PRRT4C9JH25 899 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 HYPMO75409 117 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 EML2O95834 649 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 ISG15P05161 165 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 IER3P46695 156 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 GABRA2P47869 451 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 SLC35B1P78383 322 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 C1orf61Q13536 156 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 RUNX3Q13761 415 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 OR8B12Q8NGG6 310 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 ABHD3Q8WU67 409 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 CFHR5Q9BXR6 569 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 TBC1D29Q9UFV1 150 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 WASHC3Q9Y3C0 194 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 CNOT1A5YKK6 2376 aaKnown RBP12.67□□□□□ -0.38
PTPRA-201ENST00000216877 CYR61O00622 381 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 PDLIM4P50479 330 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 BIDP55957 195 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 FAM19A2Q8N3H0 131 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 ADH1BP00325 375 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 PAFAH1B2P68402 229 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 TEX43Q6ZNM6 134 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 CA13Q8N1Q1 262 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 KLHDC1Q8N7A1 406 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 MSI2Q96DH6 328 aaKnown RBP12.67□□□□□ -0.38
PTPRA-201ENST00000216877 WDYHV1Q96HA8 205 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 CLN8Q9UBY8 286 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 CACNA1EQ15878 2313 aa12.67□□□□□ -0.38
PTPRA-201ENST00000216877 ASXL3Q9C0F0 2248 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 TMED7-TICAM2A0A0A6YYA0 188 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 BLKP51451 505 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.66□□□□□ -0.38
PTPRA-201ENST00000216877 LCN12Q6JVE5 192 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 OR2V1Q8NHB1 315 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 ANAPC16Q96DE5 110 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 VDAC3Q9Y277 283 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 PRUNE2Q8WUY3 3088 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 A0A1W2PRS3 328 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 A6NCN8 305 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 GUCA1AP43080 201 aaPredicted RBP12.66□□□□□ -0.38
PTPRA-201ENST00000216877 PRAMEF20Q5VT98 475 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 OOSP2Q86WS3 158 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 TCTEX1D1Q8N7M0 179 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 BORCS7Q96B45 105 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 FAM206AQ9NX38 181 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 TBL2Q9Y4P3 447 aaKnown RBP12.66□□□□□ -0.38
PTPRA-201ENST00000216877 B4DGG1 531 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 ETV2O00321 342 aaPredicted RBP12.66□□□□□ -0.38
PTPRA-201ENST00000216877 MPPED1O15442 326 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 C1QTNF9P0C862 333 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 MPLP40238 635 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 HTD2P86397 168 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 SGCBQ16585 318 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 TSACCQ96A04 125 aaPredicted RBP12.66□□□□□ -0.38
PTPRA-201ENST00000216877 FBXL7Q9UJT9 491 aa12.66□□□□□ -0.38
PTPRA-201ENST00000216877 TRAF3IP2O43734 574 aaPredicted RBP12.65□□□□□ -0.38
PTPRA-201ENST00000216877 TBC1D26Q86UD7 250 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 CRIPAKQ8N1N5 446 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 PATE1Q8WXA2 126 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 AHCTF1Q8WYP5 2266 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 HEATR1Q9H583 2144 aaKnown RBP12.65□□□□□ -0.38
PTPRA-201ENST00000216877 RANBP2P49792 3224 aaKnown RBP12.65□□□□□ -0.38
PTPRA-201ENST00000216877 ZNF891A8MT65 544 aaPredicted RBP12.65□□□□□ -0.38
PTPRA-201ENST00000216877 K7EP13 123 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 OR7C1O76099 320 aaPredicted RBP12.65□□□□□ -0.38
PTPRA-201ENST00000216877 RELBQ01201 579 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 C18orf12Q96KH6 178 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 HRASLS2Q9NWW9 162 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 MRPL49Q13405 166 aaKnown RBP12.65□□□□□ -0.38
PTPRA-201ENST00000216877 ZNF726P1Q15940 193 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 SNAI3Q3KNW1 292 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 Q56UQ5 140 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 AMMECR1LQ6DCA0 310 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 ADAMTSL4Q6UY14 1074 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 ZNF439Q8NDP4 499 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 SLC24A4Q8NFF2 622 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 OR2M3Q8NG83 312 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms