RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 RUNX1Q01196 453 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 MRPL21Q7Z2W9 205 aaKnown RBP17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 HS3ST6Q96QI5 342 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 LINC00470Q9BZP3 86 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 OPA3Q9H6K4 179 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 MTCH1Q9NZJ7 389 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 SIT1Q9Y3P8 196 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 MMP24Q9Y5R2 645 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 PGLYRP1O75594 196 aaPredicted RBP17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 IGHV3-9P01782 118 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 S100A2P29034 98 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 Q0VFX4 171 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 ZNF154Q13106 437 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 PYY3Q5JQD4 70 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 PPP1R32Q7Z5V6 425 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 STX12Q86Y82 276 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 ZNF610Q8N9Z0 462 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 CLDND2Q8NHS1 167 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 NIPSNAP3BQ9BS92 247 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 SIRT7Q9NRC8 400 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 DEPPQ9NTK1 212 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 DOK5Q9P104 306 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 TAAR3PQ9P1P4 343 aa17.21■□□□□ 0.35
SYNGAP1-227ENST00000638142 IGKV3D-15A0A087WSY6 115 aa17.21■□□□□ 0.34
SYNGAP1-227ENST00000638142 PAX9P55771 341 aa17.21■□□□□ 0.34
SYNGAP1-227ENST00000638142 DLK1P80370 383 aa17.21■□□□□ 0.34
SYNGAP1-227ENST00000638142 ARF1P84077 181 aaKnown RBP17.21■□□□□ 0.34
SYNGAP1-227ENST00000638142 RNPS1Q15287 305 aaKnown RBP17.21■□□□□ 0.34
SYNGAP1-227ENST00000638142 ELOBQ15370 118 aa17.21■□□□□ 0.34
SYNGAP1-227ENST00000638142 CYB561D1Q8N8Q1 229 aa17.21■□□□□ 0.34
SYNGAP1-227ENST00000638142 TVP23CQ96ET8 276 aa17.21■□□□□ 0.34
SYNGAP1-227ENST00000638142 GAR1Q9NY12 217 aaKnown RBP17.21■□□□□ 0.34
SYNGAP1-227ENST00000638142 ZNF727A8MUV8 499 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 H0YL77 283 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 COX5BP10606 129 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 SLC25A6P12236 298 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 CCNOP22674 350 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 F2RP25116 425 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 DUSP3P51452 185 aaPredicted RBP17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 CEBPGP53567 150 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 NDUFA6P56556 154 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 RPS18P62269 152 aaKnown RBP17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 KHDC3LQ587J8 217 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 SLC35E3Q7Z769 313 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 LINC00596Q86U02 117 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 PLK3Q9H4B4 646 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 IL36RNQ9UBH0 155 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 TRAV1-1A0A0B4J248 108 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 CFIP05156 583 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 SLC23A3Q6PIS1 610 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 Q8WTZ3 238 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 APOBEC3DQ96AK3 386 aaPredicted RBP17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 CRIM1Q9NZV1 1036 aa17.2■□□□□ 0.34
SYNGAP1-227ENST00000638142 TRBV6-6A0A0A6YYG2 114 aa17.19■□□□□ 0.34
SYNGAP1-227ENST00000638142 HSPB6O14558 160 aa17.19■□□□□ 0.34
SYNGAP1-227ENST00000638142 OTX2P32243 289 aa17.19■□□□□ 0.34
SYNGAP1-227ENST00000638142 PCSK4Q6UW60 755 aa17.19■□□□□ 0.34
SYNGAP1-227ENST00000638142 OR10G4Q8NGN3 311 aa17.19■□□□□ 0.34
SYNGAP1-227ENST00000638142 CFAP54Q96N23 3096 aa17.19■□□□□ 0.34
SYNGAP1-227ENST00000638142 CCDC163A0A0D9SF12 145 aa17.19■□□□□ 0.34
SYNGAP1-227ENST00000638142 A0A1B0GU03 582 aa17.19■□□□□ 0.34
SYNGAP1-227ENST00000638142 C5orf49A4QMS7 147 aa17.19■□□□□ 0.34
SYNGAP1-227ENST00000638142 RPL23AP62750 156 aaKnown RBP17.19■□□□□ 0.34
SYNGAP1-227ENST00000638142 ZNF674Q2M3X9 581 aa17.19■□□□□ 0.34
SYNGAP1-227ENST00000638142 OR5A2Q8NGI9 324 aa17.19■□□□□ 0.34
SYNGAP1-227ENST00000638142 TNFSF12O43508 249 aa17.18■□□□□ 0.34
SYNGAP1-227ENST00000638142 NXPH3O95157 252 aa17.18■□□□□ 0.34
SYNGAP1-227ENST00000638142 IFNA5P01569 189 aa17.18■□□□□ 0.34
SYNGAP1-227ENST00000638142 CXCL1P09341 107 aa17.18■□□□□ 0.34
SYNGAP1-227ENST00000638142 CYB561P49447 251 aa17.18■□□□□ 0.34
SYNGAP1-227ENST00000638142 MRPL30Q8TCC3 161 aaKnown RBP17.18■□□□□ 0.34
SYNGAP1-227ENST00000638142 RAB40CQ96S21 281 aa17.18■□□□□ 0.34
SYNGAP1-227ENST00000638142 PFDN5Q99471 154 aa17.18■□□□□ 0.34
SYNGAP1-227ENST00000638142 OR2W1Q9Y3N9 320 aa17.18■□□□□ 0.34
SYNGAP1-227ENST00000638142 TNRC6AQ8NDV7 1962 aaKnown RBP17.18■□□□□ 0.34
SYNGAP1-227ENST00000638142 SEC14L6B5MCN3 397 aa17.18■□□□□ 0.34
SYNGAP1-227ENST00000638142 HIST1H2AAQ96QV6 131 aa17.18■□□□□ 0.34
SYNGAP1-227ENST00000638142 PINLYPA6NC86 204 aa17.17■□□□□ 0.34
SYNGAP1-227ENST00000638142 SLC33A1O00400 549 aaPredicted RBP17.17■□□□□ 0.34
SYNGAP1-227ENST00000638142 SS18L1O75177 396 aaPredicted RBP17.17■□□□□ 0.34
SYNGAP1-227ENST00000638142 WNT2P09544 360 aa17.17■□□□□ 0.34
SYNGAP1-227ENST00000638142 OR13D1Q8NGV5 346 aa17.17■□□□□ 0.34
SYNGAP1-227ENST00000638142 COL6A3P12111 3177 aa17.17■□□□□ 0.34
SYNGAP1-227ENST00000638142 A0A096LPE4 126 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 LOC102723971A0A1B0GUV8 181 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 A0A1W2PPZ6 126 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 B4DEV8 164 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 HLA-HP01893 362 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 SERPINE2P07093 398 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 GLIPR1P48060 266 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 ZNF324BQ6AW86 544 aaPredicted RBP17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 ZNF343Q6P1L6 599 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 GPR146Q96CH1 333 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 PRDM6Q9NQX0 595 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 BOKQ9UMX3 212 aaPredicted RBP17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 A0A0G2JRQ6 117 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 CCL2P13500 99 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 HOXA6P31267 233 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 ERVFRD-1P60508 538 aa17.16■□□□□ 0.34
SYNGAP1-227ENST00000638142 C9orf152Q5JTZ5 239 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms