RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 CCDC144NLQ6NUI1 221 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 IZUMO2Q6UXV1 221 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 CEACAM19Q7Z692 300 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 NKAIN3Q8N8D7 197 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 UBALD1Q8TB05 177 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 SGCDQ92629 289 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 UFD1Q92890 307 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 TOMM40LQ969M1 308 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 ARL11Q969Q4 196 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 AKR1E2Q96JD6 320 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 SPACA1Q9HBV2 294 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 TRAPPC2LQ9UL33 140 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 AMMECR1Q9Y4X0 333 aaPredicted RBP9.34□□□□□ -0.91
CLN3-257ENST00000637110 TET2Q6N021 2002 aaPredicted RBP9.34□□□□□ -0.91
CLN3-257ENST00000637110 A0A087X0M5 115 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 A0A1B0GX30 115 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 J3QR06 171 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 SDCBPO00560 298 aaPredicted RBP9.33□□□□□ -0.92
CLN3-257ENST00000637110 IGLV1-47P01700 117 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 MGMTP16455 207 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 MYF6P23409 242 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 GPR50Q13585 617 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 HSD17B12Q53GQ0 312 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 UTF1Q5T230 341 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 SAMD5Q5TGI4 173 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 RNLSQ5VYX0 342 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 GLT8D1Q68CQ7 371 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 RAB12Q6IQ22 244 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 CDH26Q8IXH8 852 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 OR10X1Q8NGY0 326 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 TMEM203Q969S6 136 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 FAM46BQ96A09 425 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 MRPS24Q96EL2 167 aaKnown RBP9.33□□□□□ -0.92
CLN3-257ENST00000637110 CNBD2Q96M20 576 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 CST11Q9H112 138 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 MMP28Q9H239 520 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 IFT22Q9H7X7 185 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 ZNF702PQ9H963 129 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 ETAA1Q9NY74 926 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 PEX16Q9Y5Y5 336 aa9.33□□□□□ -0.92
CLN3-257ENST00000637110 A0A1W2PPE3 182 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 UBE2QL1A1L167 161 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 MPIG6BO95866 241 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 OPN1MWP04001 364 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 FAM106CPP0CH98 169 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 OPN1MW2P0DN77 364 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 OPN1MW3P0DN78 364 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 CGB3P0DN86 165 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 CGB7P0DN87 165 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 VHLP40337 213 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 VDAC2P45880 294 aaPredicted RBP9.32□□□□□ -0.92
CLN3-257ENST00000637110 HSPA13P48723 471 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 BLCAPP62952 87 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 SLC35A2P78381 396 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 HES1Q14469 280 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 C9orf152Q5JTZ5 239 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 NKAPLQ5M9Q1 402 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 FAM27D1Q5T7N8 215 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 LIPKQ5VXJ0 399 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 PRR18Q8N4B5 295 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 OR10A7Q8NGE5 316 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 OR4K15Q8NH41 348 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 UQCC2Q9BRT2 126 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 SLC25A33Q9BSK2 321 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 ANKRD60Q9BZ19 345 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 PSG11Q9UQ72 335 aa9.32□□□□□ -0.92
CLN3-257ENST00000637110 IGHV3-43A0A0B4J1X8 118 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A22PA8MWA6 464 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 OOSP1A8MZH6 123 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 NPIPB11E5RHQ5 1161 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 FBXO24O75426 580 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 MT-ND4P03905 459 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 IGHV3-43DP0DP04 118 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 SRMP19623 302 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 PAX5Q02548 391 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 MADCAM1Q13477 382 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 IRF3Q14653 427 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 NSUN5P1Q3KNT7 163 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 SYT6Q5T7P8 510 aaPredicted RBP9.31□□□□□ -0.92
CLN3-257ENST00000637110 UNQ9370/PRO34162Q6UXP9 181 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 ZNF497Q6ZNH5 498 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 SLC16A12Q6ZSM3 486 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 C16orf82Q7Z2V1 217 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 LYG1Q8N1E2 194 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 TMEM104Q8NE00 496 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 NEDD4LQ96PU5 975 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 DUSP21Q9H596 190 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 LIN7BQ9HAP6 207 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 RAB9BQ9NP90 201 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 KCNIP1Q9NZI2 227 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 GHRLQ9UBU3 117 aa9.31□□□□□ -0.92
CLN3-257ENST00000637110 LSM2Q9Y333 95 aaKnown RBP9.31□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A10PA6NDY2 464 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A18PA6NE21 464 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A16PA6NEW6 464 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A20PA6NIJ5 464 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A7PA6NKC0 464 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A12PA8MX19 464 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A5PA8MXJ8 464 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A23PA8MXZ1 464 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms