RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 IGHV3-64DA0A0J9YX35 117 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 BCL2L11O43521 198 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 TRGC2P03986 189 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 RELAQ04206 551 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 DLEU7Q6UYE1 221 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 B3GNT8Q7Z7M8 397 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 CA13Q8N1Q1 262 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 ARIH2OSQ8N7S6 290 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 KIR3DX1Q9H7L2 352 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 ZDHHC8Q9ULC8 765 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 A0A087WV62 115 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 TCRBV7S3A2A0A539 114 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 F12P00748 615 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 PABPC1L2AQ5JQF8 200 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 PSMG4Q5JS54 123 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 S100A7L2Q5SY68 101 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 PRSS54Q6PEW0 395 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 DEGS2Q6QHC5 323 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 C20orf196Q8IYI0 205 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 PAM16Q9Y3D7 125 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 TNFRSF18Q9Y5U5 241 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 ANKRD20A5PA0PJZ0 165 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 PRSS37A4D1T9 235 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF253O75346 499 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 GP1BAP07359 652 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 GFRA1P56159 465 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 SMAD4Q13485 552 aaKnown RBP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 TRA2AQ13595 282 aaKnown RBP eCLIP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 CYS1Q717R9 158 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 BHLHA15Q7RTS1 189 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 TTC9CQ8N5M4 171 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 BAHD1Q8TBE0 780 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 ORAOV1Q8WV07 137 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF778Q96MU6 729 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 AICDAQ9GZX7 198 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 CICQ96RK0 1608 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 ITGB4P16144 1822 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 TRAV41A0A0B4J266 112 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 HBZP02008 142 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 FMODQ06828 376 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 DEFB123Q8N688 67 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 OR52I1Q8NGK6 324 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 OR5C1Q8NGR4 320 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 FBXO27Q8NI29 283 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 SLC17A5Q9NRA2 495 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 NTMQ9P121 344 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 KCNE5Q9UJ90 142 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 RGPD2P0DJD1 1756 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 PTPRDP23468 1912 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 GEMIN2O14893 280 aaKnown RBP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 TMIGD3P0DMS9 266 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 ARSAP15289 507 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 CEACAM8P31997 349 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 FUT7Q11130 342 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF506Q5JVG8 444 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 SPATA46Q5T0L3 261 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 LIPNQ5VXI9 398 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 OR5M9Q8NGP3 310 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 ABHD1Q96SE0 405 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF576Q9H609 170 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 FAM53CQ9NYF3 392 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 DHCR7Q9UBM7 475 aaKnown RBP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 OPN4Q9UHM6 478 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 BCL9LQ86UU0 1499 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 TRAV12-3A0A0B4J271 114 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 ABLIM3O94929 683 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 SLC2A10O95528 541 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 PMELP40967 661 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 PCBP3P57721 371 aaKnown RBP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 B4GALNT1Q00973 533 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 GDF7Q7Z4P5 450 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 OR10G4Q8NGN3 311 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 OR10G9Q8NGN4 311 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 OR10G7Q8NGN6 311 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 TMEM189A5PLL7 270 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 TMEM189-UBE2V1I3L0A0 370 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 GASTP01350 101 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 SOD3P08294 240 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 HIST1H4AP62805 103 aaKnown RBP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 PPP1R1CQ8WVI7 109 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 NEUROG1Q92886 237 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 NEU1Q99519 415 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 OVOL2Q9BRP0 275 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 TOMM7Q9P0U1 55 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 SF3B6Q9Y3B4 125 aaKnown RBP5.35□□□□□ -1.55
SCN1A-212ENST00000636194 USP54Q70EL1 1684 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 SPINT1O43278 529 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 MOSPD3O75425 235 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 MT-ND6P03923 174 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 FECHP22830 423 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 Q5PR19 223 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 PRNTQ86SH4 94 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 NIPSNAP1Q9BPW8 284 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 NPVFQ9HCQ7 196 aa5.35□□□□□ -1.55
SCN1A-212ENST00000636194 HOXC11O43248 304 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-212ENST00000636194 TCL1AP56279 114 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 POU2AF1Q16633 256 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 IGSF8Q969P0 613 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 TXNRD2Q9NNW7 524 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 SLC25A15Q9Y619 301 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms