RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 IDI2-AS1Q9NZ38 188 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 TRAPPC2LQ9UL33 140 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 A0A087X0M5 115 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 A0A1B0GX30 115 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 UBE2QL1A1L167 161 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 FAM181BA6NEQ2 426 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 IFITM5A6NNB3 132 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 NPIPB11E5RHQ5 1161 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 TOR1AO14656 332 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 CD36P16671 472 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 HTR1DP28221 377 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 CLDN12P56749 244 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 RPL15P61313 204 aaKnown RBP16.8■□□□□ 0.28
CLN3-240ENST00000631023 FOXL1Q12952 345 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 LRRC75BQ2VPJ9 315 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 C2orf76Q3KRA6 126 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 HES5Q5TA89 166 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 TPRA1Q86W33 373 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 CCDC107Q8WV48 283 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 CREB3L1Q96BA8 519 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 KCNK15Q9H427 330 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 FBLN5Q9UBX5 448 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 VPREB3Q9UKI3 123 aa16.8■□□□□ 0.28
CLN3-240ENST00000631023 TRAV39A0A0B4J263 110 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 SHISA3A0PJX4 238 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 ORC5O43913 435 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 CHATP28329 748 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 SSTR5P35346 364 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 GDNFP39905 211 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 OR10A3P58181 314 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 SSX2Q16385 188 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 GDPGP1Q6ZNW5 385 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 RFESDQ8TAC1 157 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 NDNFQ8TB73 568 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 KCTD7Q96MP8 289 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 OR51E2Q9H255 320 aa16.79■□□□□ 0.28
CLN3-240ENST00000631023 CFPP27918 469 aa16.78■□□□□ 0.28
CLN3-240ENST00000631023 BLVRBP30043 206 aaPredicted RBP16.78■□□□□ 0.28
CLN3-240ENST00000631023 C6orf183Q5T699 404 aa16.78■□□□□ 0.28
CLN3-240ENST00000631023 TRAT1Q6PIZ9 186 aa16.78■□□□□ 0.28
CLN3-240ENST00000631023 BAIAP2L2Q6UXY1 529 aa16.78■□□□□ 0.28
CLN3-240ENST00000631023 C12orf54Q6X4T0 127 aa16.78■□□□□ 0.28
CLN3-240ENST00000631023 SLC16A12Q6ZSM3 486 aa16.78■□□□□ 0.28
CLN3-240ENST00000631023 GAPTQ8N292 157 aa16.78■□□□□ 0.28
CLN3-240ENST00000631023 ARL11Q969Q4 196 aa16.78■□□□□ 0.28
CLN3-240ENST00000631023 CHCHD6Q9BRQ6 235 aa16.78■□□□□ 0.28
CLN3-240ENST00000631023 NICN1Q9BSH3 213 aa16.78■□□□□ 0.28
CLN3-240ENST00000631023 ZNF286AQ9HBT8 521 aa16.78■□□□□ 0.28
CLN3-240ENST00000631023 PLEKHJ1Q9NW61 149 aa16.78■□□□□ 0.28
CLN3-240ENST00000631023 FAM172BPA6NC97 362 aa16.77■□□□□ 0.28
CLN3-240ENST00000631023 H3BUX3 64 aa16.77■□□□□ 0.28
CLN3-240ENST00000631023 COMPP49747 757 aaPredicted RBP16.77■□□□□ 0.28
CLN3-240ENST00000631023 FAM189A2Q15884 450 aa16.77■□□□□ 0.28
CLN3-240ENST00000631023 OR4K15Q8NH41 348 aa16.77■□□□□ 0.28
CLN3-240ENST00000631023 OR9G1Q8NH87 305 aa16.77■□□□□ 0.28
CLN3-240ENST00000631023 LPAR5Q9H1C0 372 aa16.77■□□□□ 0.28
CLN3-240ENST00000631023 DPM3Q9P2X0 92 aa16.77■□□□□ 0.28
CLN3-240ENST00000631023 RAB22AQ9UL26 194 aa16.77■□□□□ 0.28
CLN3-240ENST00000631023 LOC100506127A0A0U1RQW1 187 aa16.77■□□□□ 0.27
CLN3-240ENST00000631023 GPR137BO60478 399 aa16.77■□□□□ 0.27
CLN3-240ENST00000631023 IGLV1-47P01700 117 aa16.77■□□□□ 0.27
CLN3-240ENST00000631023 CEACAM3P40198 252 aa16.77■□□□□ 0.27
CLN3-240ENST00000631023 LTC4SQ16873 150 aa16.77■□□□□ 0.27
CLN3-240ENST00000631023 TIMM50Q3ZCQ8 353 aa16.77■□□□□ 0.27
CLN3-240ENST00000631023 C6orf201Q7Z4U5 140 aa16.77■□□□□ 0.27
CLN3-240ENST00000631023 FAM89BQ8N5H3 189 aa16.77■□□□□ 0.27
CLN3-240ENST00000631023 OR52M1Q8NGK5 317 aa16.77■□□□□ 0.27
CLN3-240ENST00000631023 OR4P4Q8NGL7 312 aa16.77■□□□□ 0.27
CLN3-240ENST00000631023 FAAP24Q9BTP7 215 aa16.77■□□□□ 0.27
CLN3-240ENST00000631023 KCNIP1Q9NZI2 227 aa16.77■□□□□ 0.27
CLN3-240ENST00000631023 NOTOA8MTQ0 251 aa16.76■□□□□ 0.27
CLN3-240ENST00000631023 VGLL3A8MV65 326 aa16.76■□□□□ 0.27
CLN3-240ENST00000631023 LEUTXA8MZ59 168 aa16.76■□□□□ 0.27
CLN3-240ENST00000631023 C15orf65H3BRN8 121 aa16.76■□□□□ 0.27
CLN3-240ENST00000631023 SPINT2O43291 252 aa16.76■□□□□ 0.27
CLN3-240ENST00000631023 GADD45AP24522 165 aa16.76■□□□□ 0.27
CLN3-240ENST00000631023 PAX6P26367 422 aa16.76■□□□□ 0.27
CLN3-240ENST00000631023 OR56B1Q8NGI3 324 aa16.76■□□□□ 0.27
CLN3-240ENST00000631023 SULT4A1Q9BR01 284 aa16.76■□□□□ 0.27
CLN3-240ENST00000631023 LIN7BQ9HAP6 207 aa16.76■□□□□ 0.27
CLN3-240ENST00000631023 ABCB10Q9NRK6 738 aa16.76■□□□□ 0.27
CLN3-240ENST00000631023 HILPDAQ9Y5L2 63 aa16.76■□□□□ 0.27
CLN3-240ENST00000631023 TMEM272A0A1B0GTI8 110 aa16.75■□□□□ 0.27
CLN3-240ENST00000631023 LDLRAD4O15165 306 aa16.75■□□□□ 0.27
CLN3-240ENST00000631023 VEGFCP49767 419 aa16.75■□□□□ 0.27
CLN3-240ENST00000631023 ARHGDIBP52566 201 aa16.75■□□□□ 0.27
CLN3-240ENST00000631023 HLA-DRB5Q30154 266 aa16.75■□□□□ 0.27
CLN3-240ENST00000631023 LDLRAD2Q5SZI1 272 aa16.75■□□□□ 0.27
CLN3-240ENST00000631023 DYNAPQ8N1N2 210 aa16.75■□□□□ 0.27
CLN3-240ENST00000631023 HSF4Q9ULV5 492 aa16.75■□□□□ 0.27
CLN3-240ENST00000631023 AMMECR1Q9Y4X0 333 aaPredicted RBP16.75■□□□□ 0.27
CLN3-240ENST00000631023 A0A0A6YYD4 124 aa16.74■□□□□ 0.27
CLN3-240ENST00000631023 BUB1B-PAK6H3BSN5 160 aa16.74■□□□□ 0.27
CLN3-240ENST00000631023 J3QR06 171 aa16.74■□□□□ 0.27
CLN3-240ENST00000631023 SDCBPO00560 298 aaPredicted RBP16.74■□□□□ 0.27
CLN3-240ENST00000631023 SOCS1O15524 211 aa16.74■□□□□ 0.27
CLN3-240ENST00000631023 JUNBP17275 347 aaPredicted RBP16.74■□□□□ 0.27
CLN3-240ENST00000631023 RCC1P18754 421 aaPredicted RBP16.74■□□□□ 0.27
CLN3-240ENST00000631023 TMEM30BQ3MIR4 351 aa16.74■□□□□ 0.27
CLN3-240ENST00000631023 PLA1AQ53H76 456 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms