RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 OMGP23515 440 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 SAA4P35542 130 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 RPS19P39019 145 aaKnown RBP13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 GDNFP39905 211 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 VEGFCP49767 419 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 TMEM50BP56557 158 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 HILS1P60008 231 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 DEFB112Q30KQ8 113 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 RTN4RL2Q86UN3 420 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 OR13D1Q8NGV5 346 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 CCDC107Q8WV48 283 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 PTX4Q96A99 478 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 FAAP24Q9BTP7 215 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 PRDM13Q9H4Q3 707 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 LINC00574Q9H8X3 128 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 GZMHP20718 246 aa13.48□□□□□ -0.25
CCDC28A-202ENST00000611852 SSTR5P35346 364 aa13.48□□□□□ -0.25
CCDC28A-202ENST00000611852 NCS1P62166 190 aa13.48□□□□□ -0.25
CCDC28A-202ENST00000611852 SRSF2Q01130 221 aaKnown RBP13.48□□□□□ -0.25
CCDC28A-202ENST00000611852 MIDNQ504T8 468 aa13.48□□□□□ -0.25
CCDC28A-202ENST00000611852 BAIAP2L2Q6UXY1 529 aa13.48□□□□□ -0.25
CCDC28A-202ENST00000611852 RBMS3Q6XE24 437 aaKnown RBP13.48□□□□□ -0.25
CCDC28A-202ENST00000611852 OR11H6Q8NGC7 330 aa13.48□□□□□ -0.25
CCDC28A-202ENST00000611852 OR56B1Q8NGI3 324 aa13.48□□□□□ -0.25
CCDC28A-202ENST00000611852 TMEM133Q9H2Q1 129 aa13.48□□□□□ -0.25
CCDC28A-202ENST00000611852 PLEKHJ1Q9NW61 149 aa13.48□□□□□ -0.25
CCDC28A-202ENST00000611852 HSF4Q9ULV5 492 aa13.48□□□□□ -0.25
CCDC28A-202ENST00000611852 MEIOCA2RUB1 952 aa13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 NPIPB11E5RHQ5 1161 aa13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 VENTXO95231 258 aa13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 IL1AP01583 271 aa13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 SNRPBP14678 240 aaKnown RBP13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 VBP1P61758 197 aa13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 FAM189A2Q15884 450 aa13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 IDNKQ5T6J7 187 aa13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 OR52W1Q6IF63 320 aa13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 OR4K15Q8NH41 348 aa13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 KIRREL1Q96J84 757 aa13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 DCUN1D5Q9BTE7 237 aa13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 TRAPPC2LQ9UL33 140 aa13.47□□□□□ -0.25
CCDC28A-202ENST00000611852 IGHV2-26A0A0B4J1V2 119 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 ODF3BA8MYP8 253 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 C15orf65H3BRN8 121 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 PAHP00439 452 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 KRTAP21-3Q3LHN1 58 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 MOGAT2Q3SYC2 334 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 PLAC9Q5JTB6 97 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 ZNF626Q68DY1 528 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 Q6ZTK2 550 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 RFESDQ8TAC1 157 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 MRPL30Q8TCC3 161 aaKnown RBP13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 LGALS14Q8TCE9 139 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 AJUBAQ96IF1 538 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 ARHGAP5-AS1Q96IT6 56 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 JMJD8Q96S16 334 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 CLEC7AQ9BXN2 247 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 ESM1Q9NQ30 184 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 FAM96BQ9Y3D0 163 aa13.46□□□□□ -0.25
CCDC28A-202ENST00000611852 A0A087X0M5 115 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 A0A1B0GX30 115 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 METTL21EPA6NDL7 271 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 RAB27BO00194 218 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 ORC5O43913 435 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 TMEM127O75204 238 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 RCC1P18754 421 aaPredicted RBP13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 SCAND1P57086 179 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 Q6YL49 198 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 CROCCP3Q8IVE0 287 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 ZDHHC22Q8N966 263 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 OR10R2Q8NGX6 335 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 C17orf50Q8WW18 174 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 ZDHHC16Q969W1 377 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 PECRQ9BY49 303 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 MBNL3Q9NUK0 354 aaKnown RBP13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 IDI2-AS1Q9NZ38 188 aa13.45□□□□□ -0.26
CCDC28A-202ENST00000611852 FAM172BPA6NC97 362 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 C12orf77C9JDV5 145 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 NAPSAO96009 420 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 ARG1P05089 322 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 NFYBP25208 207 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 CD34P28906 385 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 SERPINB10P48595 397 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 LGALS4P56470 323 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 BAMBIQ13145 260 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 SPCS2Q15005 226 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 UTF1Q5T230 341 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 C6orf183Q5T699 404 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 ABHD12Q8N2K0 398 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 OR10A7Q8NGE5 316 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 ARL11Q969Q4 196 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 SLC25A46Q96AG3 418 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 RAB3CQ96E17 227 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 ATG5Q9H1Y0 275 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 ZNF286AQ9HBT8 521 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 AK3Q9UIJ7 227 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 KCNK7Q9Y2U2 307 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 DNAJC9-AS1A6NH13 148 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 FBP1P09467 338 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 DYNC1I2Q13409 638 aaKnown RBP13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 LTC4SQ16873 150 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms