RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 LIMS3P0CW19 117 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 LIMS4P0CW20 117 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 GZMHP20718 246 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 SLC6A1P30531 599 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 RBM11P57052 281 aaKnown RBP10.37□□□□□ -0.75
RPS28-204ENST00000602140 EBI3Q14213 229 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 KLHL22Q53GT1 634 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 ZNF695Q8IW36 515 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 OR52N1Q8NH53 320 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 UBALD1Q8TB05 177 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 TMEM106AQ96A25 262 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 EAF1Q96JC9 268 aaPredicted RBP10.37□□□□□ -0.75
RPS28-204ENST00000602140 DUX3Q96PT4 197 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 P2RX4Q99571 388 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 SLC29A1Q99808 456 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 METTL9Q9H1A3 318 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 IFT22Q9H7X7 185 aa10.37□□□□□ -0.75
RPS28-204ENST00000602140 RPL36Q9Y3U8 105 aaKnown RBP10.37□□□□□ -0.75
RPS28-204ENST00000602140 TMEM30CPA0ZSE6 113 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 C15orf65H3BRN8 121 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 SDCBPO00560 298 aaPredicted RBP10.36□□□□□ -0.75
RPS28-204ENST00000602140 SERPINA2P20848 420 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 ZNF93P35789 620 aaPredicted RBP10.36□□□□□ -0.75
RPS28-204ENST00000602140 PPP3R1P63098 170 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 NHLRC3Q5JS37 347 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 ATAD3CQ5T2N8 411 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 DDI2Q5TDH0 399 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 FAM53AQ6NSI3 398 aaPredicted RBP10.36□□□□□ -0.75
RPS28-204ENST00000602140 RPL22L1Q6P5R6 122 aaKnown RBP10.36□□□□□ -0.75
RPS28-204ENST00000602140 TEX38Q6PEX7 206 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 UNQ9370/PRO34162Q6UXP9 181 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 TGIF2LXQ8IUE1 241 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 CCDC107Q8WV48 283 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 APH1BQ8WW43 257 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 ARL11Q969Q4 196 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 S100A13Q99584 98 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 B9D2Q9BPU9 175 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 C9orf16Q9BUW7 83 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 FGF20Q9NP95 211 aaPredicted RBP10.36□□□□□ -0.75
RPS28-204ENST00000602140 TMEM138Q9NPI0 162 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 IL36GQ9NZH8 169 aa10.36□□□□□ -0.75
RPS28-204ENST00000602140 KMT2CQ8NEZ4 4911 aaKnown RBP10.36□□□□□ -0.75
RPS28-204ENST00000602140 IGHV3-43A0A0B4J1X8 118 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 CCL24O00175 119 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 AP4M1O00189 453 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 IGHV3-43DP0DP04 118 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 BDKRB2P30411 391 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 GPR12P47775 334 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 ETV1P50549 477 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 RAB25P57735 213 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 PNLIPRP3Q17RR3 467 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 CCDC58Q4VC31 144 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 OR2G6Q5TZ20 316 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 LINC00596Q86U02 117 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 IZUMO1Q8IYV9 350 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 LINC00311Q8N616 119 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 Q8N6K4 173 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 Q8N9W7 124 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 OR52M1Q8NGK5 317 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 OR2T10Q8NGZ9 312 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 NEK7Q8TDX7 302 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 ORAI1Q96D31 301 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 RAX2Q96IS3 184 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 ABCG5Q9H222 651 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 LIN7CQ9NUP9 197 aaKnown RBP10.35□□□□□ -0.75
RPS28-204ENST00000602140 PAK1IP1Q9NWT1 392 aaPredicted RBP10.35□□□□□ -0.75
RPS28-204ENST00000602140 GFOD1Q9NXC2 390 aa10.35□□□□□ -0.75
RPS28-204ENST00000602140 SIRT4Q9Y6E7 314 aaPredicted RBP10.35□□□□□ -0.75
RPS28-204ENST00000602140 A0A1W2PP11 408 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 H0YHG0 523 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 RPLP1P05386 114 aaKnown RBP10.34□□□□□ -0.75
RPS28-204ENST00000602140 VSIG8P0DPA2 414 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 DGCR2P98153 550 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 SMN1Q16637 294 aaKnown RBP10.34□□□□□ -0.75
RPS28-204ENST00000602140 MPV17LQ2QL34 196 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 SLC22A6Q4U2R8 563 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 TMPRSS11AQ6ZMR5 421 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 ZNF497Q6ZNH5 498 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 LCNL1Q6ZST4 164 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 C8orf31Q8N9H6 132 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 TMEM104Q8NE00 496 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 RTN4IP1Q8WWV3 396 aaPredicted RBP10.34□□□□□ -0.75
RPS28-204ENST00000602140 TFAP2CQ92754 450 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 ST6GALNAC6Q969X2 333 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 DCLRE1BQ9H816 532 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 PLSCR3Q9NRY6 295 aa10.34□□□□□ -0.75
RPS28-204ENST00000602140 ZMAT5Q9UDW3 170 aaKnown RBP10.34□□□□□ -0.75
RPS28-204ENST00000602140 TENM3Q9P273 2699 aa10.33□□□□□ -0.76
RPS28-204ENST00000602140 ZNF736B4DX44 427 aaPredicted RBP10.33□□□□□ -0.76
RPS28-204ENST00000602140 AIPO00170 330 aa10.33□□□□□ -0.76
RPS28-204ENST00000602140 SLC31A2O15432 143 aa10.33□□□□□ -0.76
RPS28-204ENST00000602140 OGG1O15527 345 aa10.33□□□□□ -0.76
RPS28-204ENST00000602140 ORC5O43913 435 aa10.33□□□□□ -0.76
RPS28-204ENST00000602140 ZNF780AO75290 641 aaPredicted RBP10.33□□□□□ -0.76
RPS28-204ENST00000602140 WBP4O75554 376 aaKnown RBP10.33□□□□□ -0.76
RPS28-204ENST00000602140 MT-ND4P03905 459 aa10.33□□□□□ -0.76
RPS28-204ENST00000602140 GTF2F2P13984 249 aa10.33□□□□□ -0.76
RPS28-204ENST00000602140 IL3RAP26951 378 aa10.33□□□□□ -0.76
RPS28-204ENST00000602140 CD1BP29016 333 aa10.33□□□□□ -0.76
RPS28-204ENST00000602140 RIPK1Q13546 671 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms