RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 BDKRB2P30411 391 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 IL13RA2Q14627 380 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 DDI2Q5TDH0 399 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 RSBN1Q5VWQ0 802 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-212ENST00000597995 AHSA2Q719I0 299 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 OR2W3Q7Z3T1 314 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 ZNF329Q86UD4 541 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 OR13A1Q8NGR1 328 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 OR9G1Q8NH87 305 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 NRG4Q8WWG1 115 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 TFAP2CQ92754 450 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 FAM192AQ9GZU8 254 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 IL36GQ9NZH8 169 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 CNOT2Q9NZN8 540 aaKnown RBP9.9□□□□□ -0.82
TRIM28-212ENST00000597995 OR6C3Q9NZP0 311 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 KIF25Q9UIL4 384 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 TRAV39A0A0B4J263 110 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 KBTBD11-OT1A0A1B0GTJ5 212 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 PNMA8CA0A1B0GUJ8 204 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 RAMP3O60896 148 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 HTR3BO95264 441 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 ZNF93P35789 620 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-212ENST00000597995 GP2P55259 537 aaKnown RBP9.89□□□□□ -0.83
TRIM28-212ENST00000597995 DGCR2P98153 550 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 PAX5Q02548 391 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 RIPK1Q13546 671 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 RSU1Q15404 277 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 Q499Y3 187 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 PAN3Q58A45 887 aaKnown RBP9.89□□□□□ -0.83
TRIM28-212ENST00000597995 YIF1BQ5BJH7 314 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 NHLRC3Q5JS37 347 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 LYPD6Q86Y78 171 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 BPIFB6Q8NFQ5 453 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 RPEQ96AT9 228 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 CPNE2Q96FN4 548 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-212ENST00000597995 KIRREL1Q96J84 757 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 CYYR1Q96J86 154 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 OR14A2Q96R54 314 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 P2RX4Q99571 388 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 ZNF184Q99676 751 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-212ENST00000597995 NCOR1P1Q9H4R4 102 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 LINC00574Q9H8X3 128 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 ING4Q9UNL4 249 aa9.89□□□□□ -0.83
TRIM28-212ENST00000597995 AMMECR1Q9Y4X0 333 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-212ENST00000597995 MEIKINA0A087WXM9 373 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 GEMIN2O14893 280 aaKnown RBP9.88□□□□□ -0.83
TRIM28-212ENST00000597995 FGF16O43320 207 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 FSTP19883 344 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 RBM11P57052 281 aaKnown RBP9.88□□□□□ -0.83
TRIM28-212ENST00000597995 PPP3R1P63098 170 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 SLC35B1P78383 322 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 RBM39Q14498 530 aaKnown RBP9.88□□□□□ -0.83
TRIM28-212ENST00000597995 C8orf86Q6ZUL3 223 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 NANOGP1Q8N7R0 232 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 C5orf56Q8N8D9 126 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 ZNF565Q8N9K5 539 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 SUMF2Q8NBJ7 301 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 TOMM40LQ969M1 308 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 METTL9Q9H1A3 318 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 IFT22Q9H7X7 185 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 DCLRE1BQ9H816 532 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 CHCHD3Q9NX63 227 aaKnown RBP9.88□□□□□ -0.83
TRIM28-212ENST00000597995 CALYQ9NYX4 217 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 ST3GAL6Q9Y274 331 aa9.88□□□□□ -0.83
TRIM28-212ENST00000597995 SERPINE3A8MV23 424 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 NUDT19A8MXV4 375 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 NPIPB11E5RHQ5 1161 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 H0YHG0 523 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 J3QR06 171 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 IGHV3-7P01780 117 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 IGHG2P01859 326 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 SNRNP70P08621 437 aaKnown RBP9.87□□□□□ -0.83
TRIM28-212ENST00000597995 CELP19835 753 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 SERPINA2P20848 420 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 NFYBP25208 207 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 GLP1RP43220 463 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 WNT4P56705 351 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 MED21Q13503 144 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 INSL4Q14641 139 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 C18orf65Q6ZTR6 163 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 ZNF695Q8IW36 515 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 OR8H3Q8N146 312 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 STX19Q8N4C7 294 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 KLHL30-AS1Q8NEE0 82 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 OR56B4Q8NH76 319 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 RFESDQ8TAC1 157 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 MRGPRDQ8TDS7 321 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 LEAP2Q969E1 77 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 NOL4LQ96MY1 436 aaPredicted RBP9.87□□□□□ -0.83
TRIM28-212ENST00000597995 DERL3Q96Q80 235 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 DPCDQ9BVM2 203 aaPredicted RBP9.87□□□□□ -0.83
TRIM28-212ENST00000597995 PAK1IP1Q9NWT1 392 aaPredicted RBP9.87□□□□□ -0.83
TRIM28-212ENST00000597995 U3KQK5 164 aa9.87□□□□□ -0.83
TRIM28-212ENST00000597995 A0A1W2PPI3 338 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 OR7C1O76099 320 aaPredicted RBP9.86□□□□□ -0.83
TRIM28-212ENST00000597995 IL1AP01583 271 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 CD1AP06126 327 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 CDK1P06493 297 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 TMEM11P17152 192 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 SSTR5P35346 364 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms