RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ZNF525Q8N782 197 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 OR56B4Q8NH76 319 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 CORO2AQ92828 525 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 LIME1Q9H400 295 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 PATZ1Q9HBE1 687 aaKnown RBP12.67□□□□□ -0.38
TRIM28-209ENST00000597423 TAF9BQ9HBM6 251 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 SLC2A8Q9NY64 477 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 UBE2J1Q9Y385 318 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-209ENST00000597423 COL12A1Q99715 3063 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 TMEM30BQ3MIR4 351 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 SCGB2B2Q4G0G5 96 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 DHRS11Q6UWP2 260 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 LRRC75A-AS1Q8N1F1 130 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 CENPSQ8N2Z9 138 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 OR51S1Q8NGJ8 323 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 OR10J5Q8NHC4 309 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 TERB2Q8NHR7 220 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 H1FXQ92522 213 aaKnown RBP12.66□□□□□ -0.38
TRIM28-209ENST00000597423 ARL11Q969Q4 196 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 PERPQ96FX8 193 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 SLC6A7Q99884 636 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 GINS4Q9BRT9 223 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 TAS2R3Q9NYW6 316 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 CLN8Q9UBY8 286 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 NUBP2Q9Y5Y2 271 aa12.66□□□□□ -0.38
TRIM28-209ENST00000597423 USP9YO00507 2555 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-209ENST00000597423 IGKV1D-8A0A087WSZ0 117 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 HSPA12AO43301 675 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 SCTP09683 121 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 SELLP14151 372 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 ZBTB25P24278 435 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 RBMS2Q15434 407 aaKnown RBP12.65□□□□□ -0.38
TRIM28-209ENST00000597423 HMGN3Q15651 99 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 CCBE1Q6UXH8 406 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-209ENST00000597423 IDO2Q6ZQW0 420 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 OR4D10Q8NGI6 311 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 MRGPRDQ8TDS7 321 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 GIMAP1Q8WWP7 306 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 NINJ1Q92982 152 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 RAB39BQ96DA2 213 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 CYYR1Q96J86 154 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 GAL3ST2Q9H3Q3 398 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 SLC23A1Q9UHI7 598 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 LINC00312Q9Y6C7 94 aa12.65□□□□□ -0.38
TRIM28-209ENST00000597423 TRAV39A0A0B4J263 110 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 A0A1B0GW55 424 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 ZNF729A6NN14 1252 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-209ENST00000597423 C12orf77C9JDV5 145 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 SDCBPO00560 298 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-209ENST00000597423 BET1O15155 118 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 TCRBP04435 133 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 ZNF735P0CB33 412 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 DUX4L2P0CJ85 424 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 DUX4L3P0CJ86 424 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 DUX4L4P0CJ87 422 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 DUX4L5P0CJ88 424 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 DUX4L6P0CJ89 424 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 DUX4L7P0CJ90 424 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 FCGR2CP31995 323 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 CCR6P51684 374 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 HERV-K104P61576 105 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 GNB2P62879 340 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 HTD2P86397 168 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 DEFB113Q30KQ7 82 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 PLA1AQ53H76 456 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 ESCO2Q56NI9 601 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 FAAP20Q6NZ36 180 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 LPCAT3Q6P1A2 487 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 DUX4L9Q6RFH8 374 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-209ENST00000597423 BTN2A1Q7KYR7 527 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 PRR18Q8N4B5 295 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 TPRX1Q8N7U7 411 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 OR13A1Q8NGR1 328 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 C10orf105Q8TEF2 133 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 IL1F10Q8WWZ1 152 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 NRGNQ92686 78 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 CREB3L1Q96BA8 519 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 MBD6Q96DN6 1003 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 KIRREL1Q96J84 757 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 OCEL1Q9H607 264 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 CTSZQ9UBR2 303 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 DUX4Q9UBX2 424 aa12.64□□□□□ -0.39
TRIM28-209ENST00000597423 TRBV6-7A0A0A0MS04 114 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 KBTBD11-OT1A0A1B0GTJ5 212 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 hCG_1809904A0A1W2PP81 198 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 A0A1W2PPE2 198 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 A0A1W2PR64 198 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 A0A1W2PRV1 198 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 FAM172BPA6NC97 362 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 NPIPB11E5RHQ5 1161 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 RGS11O94810 467 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 NDUFB6O95139 128 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 DHFRP00374 187 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 HBZP02008 142 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 KRTAP10-9P60411 292 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 IGSF11Q5DX21 431 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 WDR25Q64LD2 544 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-209ENST00000597423 ZNF841Q6ZN19 808 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 OR10A7Q8NGE5 316 aa12.63□□□□□ -0.39
TRIM28-209ENST00000597423 DMRTB1Q96MA1 342 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms