RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MMP28Q9H239 520 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 BANF2Q9H503 90 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 ZNF702PQ9H963 129 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 TCF7L1Q9HCS4 588 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 RAB26Q9ULW5 256 aa12.14□□□□□ -0.47
TRIM28-205ENST00000595028 TET2Q6N021 2002 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-205ENST00000595028 TRAV39A0A0B4J263 110 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 BUB1B-PAK6H3BSN5 160 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 M0QZ24 198 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 TIMM23O14925 209 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 CRTAPO75718 401 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-205ENST00000595028 UCHL1P09936 223 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 HSMCR30P0CW71 290 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 CEACAM3P40198 252 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 ARHGDIBP52566 201 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 PRRX1P54821 245 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 TPBGQ13641 420 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 RBM39Q14498 530 aaKnown RBP12.13□□□□□ -0.47
TRIM28-205ENST00000595028 TBCEQ15813 527 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-205ENST00000595028 TPTE2P1Q5T6R2 138 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 RAB12Q6IQ22 244 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 ZNF497Q6ZNH5 498 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 CEACAM19Q7Z692 300 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 DTX3Q8N9I9 347 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 OR10A7Q8NGE5 316 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 RFESDQ8TAC1 157 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 SELENOIQ9C0D9 397 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 CST11Q9H112 138 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 ISYNA1Q9NPH2 558 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 GHRLQ9UBU3 117 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 BLOC1S6Q9UL45 172 aa12.13□□□□□ -0.47
TRIM28-205ENST00000595028 AMMECR1Q9Y4X0 333 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-205ENST00000595028 OOSP1A8MZH6 123 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 LY6LH3BQJ8 138 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 AIPO00170 330 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 UBBP0CG47 229 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 PSMA1P25786 263 aaKnown RBP12.12□□□□□ -0.47
TRIM28-205ENST00000595028 BRS3P32247 399 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 VHLP40337 213 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 MAP2K4P45985 399 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 RPS25P62851 125 aaKnown RBP12.12□□□□□ -0.47
TRIM28-205ENST00000595028 LTC4SQ16873 150 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 C1orf100Q5SVJ3 147 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 GLT8D1Q68CQ7 371 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 Q8N2B8 174 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 KLHDC1Q8N7A1 406 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 LEAP2Q969E1 77 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 TMEM203Q969S6 136 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 FAM46BQ96A09 425 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 PSG11Q9UQ72 335 aa12.12□□□□□ -0.47
TRIM28-205ENST00000595028 MCRIP1C9JLW8 97 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 C15orf65H3BRN8 121 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 J3QR06 171 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 IGHV3-7P01780 117 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 MT-ND4P03905 459 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 CPEP16870 476 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 SRMP19623 302 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 GZMHP20718 246 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 TRAM1Q15629 374 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 SIGIRRQ6IA17 410 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 CCDC144NLQ6NUI1 221 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 TMEM91Q6ZNR0 172 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 SLC16A12Q6ZSM3 486 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 GAPTQ8N292 157 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 CCDC107Q8WV48 283 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 TOMM40LQ969M1 308 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 MGLLQ99685 303 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 ETAA1Q9NY74 926 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 PEX16Q9Y5Y5 336 aa12.11□□□□□ -0.47
TRIM28-205ENST00000595028 SLC22A1O15245 554 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 ORC5O43913 435 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 PDCD6O75340 191 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 CA11O75493 328 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 MPIG6BO95866 241 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 GLAP06280 429 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 VSIG8P0DPA2 414 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 FUT3P21217 361 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 CD24P25063 80 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 MNDAP41218 407 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 GNG10P50151 68 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 MADCAM1Q13477 382 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 HABP2Q14520 560 aaPredicted RBP12.1□□□□□ -0.47
TRIM28-205ENST00000595028 HERPUD1Q15011 391 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 FBLN7Q53RD9 439 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 ZNF367Q7RTV3 350 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 C16orf82Q7Z2V1 217 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 OR52M1Q8NGK5 317 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 OR6M1Q8NGM8 313 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 UBALD1Q8TB05 177 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 ARL11Q969Q4 196 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 RPEQ96AT9 228 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 PRSS22Q9GZN4 317 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 LIN7BQ9HAP6 207 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 SERTAD4Q9NUC0 356 aa12.1□□□□□ -0.47
TRIM28-205ENST00000595028 C12orf77C9JDV5 145 aa12.09□□□□□ -0.47
TRIM28-205ENST00000595028 H3BUI4 141 aa12.09□□□□□ -0.47
TRIM28-205ENST00000595028 SDCBPO00560 298 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-205ENST00000595028 ARL6IP5O75915 188 aa12.09□□□□□ -0.47
TRIM28-205ENST00000595028 CD37P11049 281 aa12.09□□□□□ -0.47
TRIM28-205ENST00000595028 HTR2CP28335 458 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms